Welcome to zygnema.plant.tools
a platform dedicated to the visualization and analysis of gene expression data and co-expression networks for Zygnema and other members of the plant kingdom.
Start your analysis by entering the gene ID, Pfam domain or Gene Ontology term. Alternatively, you can search by using keywords (Search/Search Advanced/Description) or BLAST (Search/BLAST).

Quickly retrieve genes

Use our Search function or BLAST to quickly find genes of interest.

Expression profiles and expression specificity

See in which tissues and conditions a gene of interest is expressed or find genes specifically expressed in a certain tissue/condition.

Co-expression networks

Browse co-expression networks based on thousands of publicly available RNA-Seq samples! Find clusters of co-expressed genes enriched for certain functions.

Co-expression clusters

Browse co-expression networks based on thousands of publicly available RNA-Seq samples! Find cluster of co-expressed genes enriched for certain functions.

Analyse custom gene sets

Create heatmap and expression profiles for user defined sets of genes. Build a custom co-expression network for a set of selected genes.

CoNekT is open-source

Head to GitHub for a copy of the source if you want to host your own version with in-house data or other species!

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