Coexpression cluster: Cluster_76 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003676 nucleic acid binding 19.64% (11/56) 2.24 1.6e-05 0.000979
GO:1901360 organic cyclic compound metabolic process 16.07% (9/56) 2.59 1.6e-05 0.001439
GO:0006139 nucleobase-containing compound metabolic process 14.29% (8/56) 2.6 4.7e-05 0.002132
GO:0005488 binding 39.29% (22/56) 1.34 1.4e-05 0.00257
GO:0046483 heterocycle metabolic process 14.29% (8/56) 2.46 9.4e-05 0.002862
GO:0097159 organic cyclic compound binding 26.79% (15/56) 1.52 0.000135 0.003078
GO:1901363 heterocyclic compound binding 26.79% (15/56) 1.52 0.000135 0.003078
GO:0006725 cellular aromatic compound metabolic process 14.29% (8/56) 2.47 8.8e-05 0.003214
GO:0003674 molecular_function 50.0% (28/56) 0.9 0.000179 0.003618
GO:0006351 transcription, DNA-templated 5.36% (3/56) 4.49 0.000321 0.005304
GO:0097659 nucleic acid-templated transcription 5.36% (3/56) 4.49 0.000321 0.005304
GO:0090304 nucleic acid metabolic process 10.71% (6/56) 2.51 0.000629 0.008811
GO:0034641 cellular nitrogen compound metabolic process 14.29% (8/56) 2.06 0.000592 0.008986
GO:0016070 RNA metabolic process 8.93% (5/56) 2.82 0.0007 0.009101
GO:0004386 helicase activity 5.36% (3/56) 4.06 0.000783 0.009501
GO:1901362 organic cyclic compound biosynthetic process 7.14% (4/56) 3.13 0.001138 0.011501
GO:0043167 ion binding 21.43% (12/56) 1.45 0.001117 0.011954
GO:0032774 RNA biosynthetic process 5.36% (3/56) 3.91 0.001055 0.011995
GO:0008837 diaminopimelate epimerase activity 1.79% (1/56) 8.49 0.002775 0.01804
GO:0036361 racemase activity, acting on amino acids and derivatives 1.79% (1/56) 8.49 0.002775 0.01804
GO:0047661 amino-acid racemase activity 1.79% (1/56) 8.49 0.002775 0.01804
GO:0016180 snRNA processing 1.79% (1/56) 8.49 0.002775 0.01804
GO:0034477 U6 snRNA 3'-end processing 1.79% (1/56) 8.49 0.002775 0.01804
GO:0043628 ncRNA 3'-end processing 1.79% (1/56) 8.49 0.002775 0.01804
GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives 1.79% (1/56) 8.49 0.002775 0.01804
GO:0034472 snRNA 3'-end processing 1.79% (1/56) 8.49 0.002775 0.01804
GO:0016073 snRNA metabolic process 1.79% (1/56) 8.49 0.002775 0.01804
GO:0008270 zinc ion binding 7.14% (4/56) 2.7 0.003349 0.021018
GO:0034654 nucleobase-containing compound biosynthetic process 5.36% (3/56) 3.25 0.003917 0.023761
GO:0005634 nucleus 5.36% (3/56) 3.46 0.002556 0.024483
GO:0043227 membrane-bounded organelle 5.36% (3/56) 3.11 0.005066 0.02881
GO:0043231 intracellular membrane-bounded organelle 5.36% (3/56) 3.11 0.005066 0.02881
GO:0031123 RNA 3'-end processing 1.79% (1/56) 6.91 0.008304 0.03977
GO:0009089 lysine biosynthetic process via diaminopimelate 1.79% (1/56) 6.91 0.008304 0.03977
GO:0006553 lysine metabolic process 1.79% (1/56) 6.91 0.008304 0.03977
GO:0046451 diaminopimelate metabolic process 1.79% (1/56) 6.91 0.008304 0.03977
GO:0009085 lysine biosynthetic process 1.79% (1/56) 6.91 0.008304 0.03977
GO:0140657 ATP-dependent activity 5.36% (3/56) 2.83 0.008679 0.040503
GO:0018130 heterocycle biosynthetic process 5.36% (3/56) 2.81 0.008994 0.040921
GO:0019438 aromatic compound biosynthetic process 5.36% (3/56) 2.89 0.007775 0.042882
GO:0003677 DNA binding 7.14% (4/56) 2.2 0.011083 0.045844
GO:0044238 primary metabolic process 19.64% (11/56) 1.1 0.011852 0.045894
GO:1901576 organic substance biosynthetic process 8.93% (5/56) 1.88 0.011439 0.046265
GO:0046914 transition metal ion binding 7.14% (4/56) 2.18 0.011817 0.046755
GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 1.79% (1/56) 6.49 0.011056 0.046797
GO:0016229 steroid dehydrogenase activity 1.79% (1/56) 6.49 0.011056 0.046797
GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity 1.79% (1/56) 6.49 0.011056 0.046797
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_10 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_22 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_36 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_51 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_55 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_145 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_163 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_169 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_176 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_193 0.026 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_204 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_222 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_238 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_246 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_252 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_265 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_26 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_38 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_83 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_109 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_40 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_79 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_97 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_157 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_27 0.025 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_131 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_194 0.026 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_259 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_286 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_288 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_295 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_304 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_13 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_170 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (56) (download table)

InterPro Domains

GO Terms

Family Terms