Coexpression cluster: Cluster_119 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006351 transcription, DNA-templated 6.85% (5/73) 5.12 0.0 3e-05
GO:0097659 nucleic acid-templated transcription 6.85% (5/73) 5.12 0.0 3e-05
GO:0032774 RNA biosynthetic process 6.85% (5/73) 4.52 3e-06 8.4e-05
GO:0034062 5'-3' RNA polymerase activity 5.48% (4/73) 5.4 2e-06 8.8e-05
GO:0097747 RNA polymerase activity 5.48% (4/73) 5.4 2e-06 8.8e-05
GO:0044249 cellular biosynthetic process 15.07% (11/73) 2.5 3e-06 9.5e-05
GO:0018130 heterocycle biosynthetic process 10.96% (8/73) 3.05 5e-06 0.00012
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 5.48% (4/73) 5.47 2e-06 0.000122
GO:1901576 organic substance biosynthetic process 15.07% (11/73) 2.44 5e-06 0.000123
GO:1901362 organic cyclic compound biosynthetic process 10.96% (8/73) 2.98 8e-06 0.000151
GO:0009058 biosynthetic process 15.07% (11/73) 2.32 1.1e-05 0.000202
GO:0034654 nucleobase-containing compound biosynthetic process 9.59% (7/73) 3.13 1.5e-05 0.000248
GO:0019438 aromatic compound biosynthetic process 9.59% (7/73) 2.9 4.2e-05 0.000644
GO:0044271 cellular nitrogen compound biosynthetic process 10.96% (8/73) 2.44 0.000109 0.001454
GO:0016779 nucleotidyltransferase activity 5.48% (4/73) 4.02 0.000108 0.001544
GO:0072528 pyrimidine-containing compound biosynthetic process 2.74% (2/73) 6.6 0.000166 0.002071
GO:0006139 nucleobase-containing compound metabolic process 12.33% (9/73) 2.16 0.000178 0.002099
GO:0003676 nucleic acid binding 13.7% (10/73) 1.95 0.000249 0.00226
GO:0072527 pyrimidine-containing compound metabolic process 2.74% (2/73) 6.34 0.000248 0.00236
GO:0000105 histidine biosynthetic process 2.74% (2/73) 6.34 0.000248 0.00236
GO:0006547 histidine metabolic process 2.74% (2/73) 6.34 0.000248 0.00236
GO:0016070 RNA metabolic process 8.22% (6/73) 2.8 0.000225 0.002504
GO:0003723 RNA binding 6.85% (5/73) 3.05 0.000348 0.002787
GO:0046483 heterocycle metabolic process 12.33% (9/73) 2.03 0.000336 0.002804
GO:0006725 cellular aromatic compound metabolic process 12.33% (9/73) 2.04 0.000323 0.002808
GO:1901360 organic cyclic compound metabolic process 12.33% (9/73) 2.0 0.000401 0.003084
GO:0034645 cellular macromolecule biosynthetic process 6.85% (5/73) 2.72 0.000989 0.007063
GO:0140098 catalytic activity, acting on RNA 5.48% (4/73) 3.18 0.000989 0.007325
GO:0009059 macromolecule biosynthetic process 6.85% (5/73) 2.58 0.001493 0.009633
GO:0034641 cellular nitrogen compound metabolic process 12.33% (9/73) 1.74 0.001451 0.009676
GO:0090304 nucleic acid metabolic process 8.22% (6/73) 2.29 0.00144 0.009931
GO:0044281 small molecule metabolic process 8.22% (6/73) 2.25 0.00162 0.010122
GO:1901566 organonitrogen compound biosynthetic process 6.85% (5/73) 2.43 0.002341 0.014188
GO:0019856 pyrimidine nucleobase biosynthetic process 1.37% (1/73) 7.92 0.004115 0.016136
GO:0006206 pyrimidine nucleobase metabolic process 1.37% (1/73) 7.92 0.004115 0.016136
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process 1.37% (1/73) 7.92 0.004115 0.016136
GO:0005849 mRNA cleavage factor complex 1.37% (1/73) 7.92 0.004115 0.016136
GO:0043631 RNA polyadenylation 1.37% (1/73) 7.92 0.004115 0.016136
GO:0006378 mRNA polyadenylation 1.37% (1/73) 7.92 0.004115 0.016136
GO:0006221 pyrimidine nucleotide biosynthetic process 1.37% (1/73) 7.92 0.004115 0.016136
GO:0006220 pyrimidine nucleotide metabolic process 1.37% (1/73) 7.92 0.004115 0.016136
GO:0003883 CTP synthase activity 1.37% (1/73) 7.92 0.004115 0.016136
GO:1905354 exoribonuclease complex 1.37% (1/73) 7.92 0.004115 0.016136
GO:0000178 exosome (RNase complex) 1.37% (1/73) 7.92 0.004115 0.016136
GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity 1.37% (1/73) 7.92 0.004115 0.016136
GO:0004590 orotidine-5'-phosphate decarboxylase activity 1.37% (1/73) 7.92 0.004115 0.016136
GO:0004635 phosphoribosyl-AMP cyclohydrolase activity 1.37% (1/73) 7.92 0.004115 0.016136
GO:0008378 galactosyltransferase activity 1.37% (1/73) 7.92 0.004115 0.016136
GO:0044237 cellular metabolic process 20.55% (15/73) 1.13 0.002784 0.016377
GO:0006520 cellular amino acid metabolic process 4.11% (3/73) 3.4 0.002883 0.016473
GO:0008652 cellular amino acid biosynthetic process 2.74% (2/73) 4.34 0.004347 0.016719
GO:0003677 DNA binding 6.85% (5/73) 2.16 0.005251 0.019815
GO:0140640 catalytic activity, acting on a nucleic acid 5.48% (4/73) 2.62 0.004093 0.022737
GO:0097159 organic cyclic compound binding 19.18% (14/73) 1.04 0.007088 0.025774
GO:1901363 heterocyclic compound binding 19.18% (14/73) 1.04 0.007088 0.025774
GO:0016743 carboxyl- or carbamoyltransferase activity 1.37% (1/73) 6.92 0.008213 0.02832
GO:0009435 NAD biosynthetic process 1.37% (1/73) 6.92 0.008213 0.02832
GO:0019238 cyclohydrolase activity 1.37% (1/73) 6.92 0.008213 0.02832
GO:0046394 carboxylic acid biosynthetic process 2.74% (2/73) 3.76 0.009612 0.032582
GO:0003729 mRNA binding 1.37% (1/73) 6.34 0.012294 0.035636
GO:0009112 nucleobase metabolic process 1.37% (1/73) 6.34 0.012294 0.035636
GO:0046112 nucleobase biosynthetic process 1.37% (1/73) 6.34 0.012294 0.035636
GO:0031124 mRNA 3'-end processing 1.37% (1/73) 6.34 0.012294 0.035636
GO:0043436 oxoacid metabolic process 4.11% (3/73) 2.7 0.011059 0.035675
GO:0006082 organic acid metabolic process 4.11% (3/73) 2.7 0.011059 0.035675
GO:0016741 transferase activity, transferring one-carbon groups 4.11% (3/73) 2.69 0.011328 0.035961
GO:0019752 carboxylic acid metabolic process 4.11% (3/73) 2.72 0.010794 0.035981
GO:0016053 organic acid biosynthetic process 2.74% (2/73) 3.6 0.011775 0.036797
GO:0044238 primary metabolic process 19.18% (14/73) 0.95 0.012006 0.036942
GO:0006807 nitrogen compound metabolic process 17.81% (13/73) 0.97 0.013683 0.039093
GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines 1.37% (1/73) 5.92 0.016359 0.045442
GO:0031123 RNA 3'-end processing 1.37% (1/73) 5.92 0.016359 0.045442
GO:0008152 metabolic process 20.55% (15/73) 0.84 0.017169 0.047038
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_17 0.023 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_25 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_194 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_219 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_228 0.024 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_22 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_77 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_149 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_167 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_170 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_174 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_59 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_68 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_121 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_132 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_134 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_79 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_92 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_168 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (73) (download table)

InterPro Domains

GO Terms

Family Terms