Heatmap: Cluster_2 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Archegonia (mature)
Antheridia (9 DAI)
Antheridia (small, 11 DAI)
Antheridia (mature, 14-15 DAI)
Antheridia (japan)
Antheridia
Antheridia Reute
Antheridia Gransden
Sperm cell packages
Gametophore
Gametophore (dehydrated)
Gametophore (rehydrated)
Gametophore (hydroponic)
Gametophore+auxin (hydroponic)
Leaflets
Paraphysis
Sporophyte (9 DAF)
Sporophyte (16 DAF)
Sporophyte S1
Sporophyte S2
Sporophyte S3
Sporophyte S4
Sporophyte (10 DPC)
Spore capsule (green)
Spore capsule (green, reute)
Spore capsule (mature)
Spore capsule (mature, reute)
Spores (germinating, continous light)
Protoplast
Protonema
Protonema (liquid culture)
Protonema+aba
Protonema+gametophore
Protonema+gametophore (continous light)
Protonema+gametophore (heat stress)
Protonema+gametophore (high light)
Protonema+gametophore (low light)
Protonema+gametophore+acetone
Protonema+gametophore+gib.acid (continous light)
Protonema+gametophore+glucose (blue light)
Protonema+gametophore+glucose (darkness)
Protonema+gametophore+glucose (far red light)
Protonema+gametophore+glucose (red light)
Protonema+gametophore+glucose (uv-b light)
Protonema+gametophore+jasmonate
Protonema+gametophore+stringolactone
Protonema+glucose (continous light)
Chloronema
- 4.94 - - - - - - - - - - - - - - 1.9 - - - - - - - 1.05 3.03 1.16 - - 0.28 - - - - - - - - - - - - - - - - - -
- 4.9 - 2.41 - - - - - - - - - - - - 3.39 - - - - - - - - 1.27 - - - - - - - - - - - - - - - - - - - - - -
1.95 4.33 0.24 1.67 - - - - - - - - - - - - 2.08 - - 1.09 - - - 0.95 - 2.43 - - 1.6 - - - - - - - - - - - - - - - - - - 1.55
- 2.88 - 1.02 1.38 0.13 2.42 - - 1.13 - 0.04 - - -3.35 - 0.38 2.65 - 0.79 1.71 1.51 - 1.92 1.16 1.28 0.63 - - -2.91 - - - - - - - - - - - - -0.63 - - - - -
- 2.06 1.82 1.44 0.37 0.25 0.38 -1.19 - -0.92 -0.83 0.5 -2.52 - -0.17 - 1.23 3.03 - 1.25 0.33 2.18 -1.67 1.21 1.47 1.28 -0.15 -2.94 -2.26 -2.81 -2.89 -2.23 -3.5 - - -2.64 - -2.11 - -3.31 - -1.95 -2.71 -1.97 - -2.73 -3.01 -4.81
- 3.58 0.23 - - - - - - - - - - - - - 1.28 1.82 - - 2.15 3.53 - - 1.44 1.87 - 1.09 0.76 - - - - - - - - - - - - - - 0.53 - - - 0.28
- 4.59 3.68 1.52 0.98 0.89 0.88 0.43 -3.79 -5.91 -2.19 -2.33 -7.29 - -5.37 - -3.66 -3.51 -4.72 -3.52 -3.48 -2.24 -6.94 -5.47 -5.87 -5.8 -5.6 -7.43 - -7.39 -8.71 -3.87 -7.47 -6.62 -6.68 -7.77 - - - -7.46 - - - - - -8.0 - -6.52
- 4.69 3.68 - 0.75 -0.58 1.02 1.96 - - - - - - - - - - - - - - - - - 0.04 - - - - - - - - - - - - - - - - - - - - - -
0.12 4.09 3.15 -0.43 2.48 2.33 1.19 2.5 -2.0 - - - - - -8.33 -0.15 -6.38 -1.67 - -5.22 - - -4.45 -6.36 -3.19 -4.16 -6.76 - -5.72 -9.35 - - - - -6.7 - - - - - - - - - - - - -8.33
- 4.21 - - - - - - - - - - - - - - 4.11 - - - - - - - - 3.62 - - - - - - - - - - - - - - - - - - - - - -
-1.52 2.98 0.56 2.55 -1.43 1.0 2.38 0.85 1.31 0.1 - - -2.95 - -1.4 - 2.14 0.28 - -0.15 - -2.51 - - - 2.86 - - - -2.19 1.43 - - - - - - -0.74 - -0.72 - - - - - -1.07 -2.44 -2.06
- 3.83 1.96 -0.1 1.55 3.3 1.05 2.03 0.72 -2.09 - - - - - 1.21 -0.98 0.27 - - - -0.1 - - -0.26 - - -1.96 - -4.31 -1.71 -1.26 -2.4 - -2.45 - - - - -2.33 - - -2.24 - - - -2.04 -1.76
-1.96 2.3 1.47 2.74 -1.66 0.16 -0.34 -0.24 -1.41 -3.37 -1.34 -2.43 -3.65 -7.09 -0.79 0.85 1.89 1.81 0.8 0.5 -2.87 -0.69 -0.7 -0.84 2.04 2.34 0.44 -6.15 -0.7 -3.5 -5.54 -5.44 -8.24 -5.39 0.36 -5.33 -7.1 -4.78 - -6.5 -6.87 - -5.61 -6.75 -5.36 -4.85 - 0.75
- 4.04 2.27 - 2.87 - - - - - - - - - - - - 4.28 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-2.91 4.03 -0.35 2.92 -0.66 -0.12 1.33 0.65 1.5 -3.96 0.47 0.71 -3.49 -4.32 -2.09 2.39 1.39 -1.38 - -2.7 - -4.39 -3.87 -1.55 -2.07 0.63 -3.28 - -2.78 -5.96 - - -4.62 -3.33 - - -4.21 - - - - -3.65 - - -5.15 - - -5.39
- 4.81 3.5 -2.22 -0.34 0.86 0.5 0.62 0.12 - - - - - - -0.31 -2.92 -1.44 -3.58 -2.1 - -4.71 -3.29 - - - - - - - - - - - - - - - - - - - - - - - - -
- 2.25 2.38 3.36 - -0.47 - 0.23 1.19 - - - - - -3.49 1.55 1.72 1.63 - - - 0.3 - 1.38 - 2.5 -1.5 - -1.28 -0.75 -1.71 - - - - - - -0.69 - - - - - -0.51 0.12 - - -0.78
- 5.12 0.89 - - - - - 2.72 - - - - - - - - - - - - - - - - 2.25 - - - - - - - - - - - - - - - - - - - - - -
- 4.27 -1.13 - - - - - - - - - - - - 3.86 2.11 -0.65 - - - - - - - 3.13 - - - - - - - - - - - - - - - - - - - - - -
-0.99 3.39 2.82 -1.95 2.13 1.93 0.64 0.39 - -0.68 -1.46 -2.35 -0.64 -1.6 -0.88 0.91 -1.81 -0.06 0.0 -0.46 -2.6 -0.15 - -0.98 -0.01 -2.38 -1.48 -2.04 -0.9 -0.96 -1.49 -0.56 -1.55 -1.7 -2.62 -2.09 -1.84 -0.1 -4.1 -1.85 -1.87 -1.58 -0.91 -2.58 -2.29 -1.29 -2.38 -0.11
- 5.58 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-0.67 1.95 2.3 3.08 -0.77 0.55 -0.57 0.67 - - -0.72 -0.12 - - -2.49 2.25 1.2 0.44 1.05 -0.37 -1.94 -1.28 - -1.53 0.83 1.73 1.49 - -1.21 -2.24 - - - -2.02 - - - -1.79 - -0.07 -1.29 - -0.36 - - - - -0.7
- 3.62 1.97 2.6 -1.17 -1.21 -2.62 -2.23 - -6.63 -1.03 -0.52 - - -5.51 2.37 0.11 1.1 - -1.23 -1.74 -0.69 -2.66 -0.81 1.05 2.95 1.54 - -4.05 -8.56 - - -6.36 - - - - - - - - - - - - - - -6.86
-3.51 3.63 0.83 -0.06 - 0.54 0.97 2.63 2.16 -2.97 - -3.79 -3.95 -3.35 -3.63 2.33 1.36 0.29 -2.38 -2.37 -3.3 -0.39 - -0.45 -0.96 0.21 -3.91 -1.51 -2.1 -3.57 -3.15 -2.66 -2.6 -1.65 -0.97 -0.77 -1.92 -2.34 - -2.15 -2.13 -1.37 -3.64 -1.5 -2.42 -0.79 -1.36 -1.6
-0.16 4.55 0.76 2.2 - - - - - - - - - - - - 3.63 - - - - - - - - 2.33 - - - - - - - - - - - - - - - - - - - - - -
- 2.28 2.01 0.99 -0.95 1.23 1.15 0.84 - -1.5 -2.31 -0.73 -0.87 -0.46 -1.49 0.87 0.61 0.55 2.14 0.34 1.14 0.12 -0.6 -0.08 -1.22 0.45 -1.62 -0.94 -2.39 -1.04 -1.39 -1.11 -1.47 -0.26 -1.54 -1.12 -1.12 -1.95 -0.81 -0.05 -0.79 -1.25 -0.77 -1.39 -1.33 -1.04 -2.1 -0.81
- 4.95 - - - - - - - 0.74 - - - - -1.72 - - 0.22 - - - - - - - - - 1.08 - -0.17 - - - 1.75 - - - 1.34 - 0.71 - - - 1.74 - - - -
-0.0 2.2 2.61 1.05 0.7 1.47 1.73 0.6 - 0.38 - - -1.01 -2.0 -0.25 -4.85 1.64 -1.14 2.74 -0.42 -2.59 -0.74 1.37 -2.48 -2.28 -0.45 -3.42 -0.57 -1.84 -2.21 -1.55 -2.65 -1.99 -1.33 -4.19 -1.78 -1.17 -2.76 -2.9 -1.71 -2.62 -1.74 -0.33 -1.21 -2.28 -2.61 -1.28 -1.44
0.36 2.25 -0.95 -0.76 0.74 1.22 0.36 0.72 -1.74 -0.08 1.54 1.53 -0.71 -0.54 0.12 2.78 -1.6 -3.49 -0.32 -1.48 -1.97 -2.07 -3.5 -0.17 -1.59 -3.61 -1.01 -2.09 -0.16 -1.54 -1.65 0.62 0.0 -1.4 0.9 0.39 -1.74 -1.05 -1.35 -1.2 -1.56 -1.43 -1.68 -1.49 -0.19 -1.09 -1.05 -0.03
- 3.61 -2.12 0.7 1.33 3.31 2.0 2.19 -2.27 -2.74 -1.35 - -2.19 -1.69 -2.0 2.53 -6.08 -4.83 - -5.66 -3.24 -0.41 -4.98 -1.51 -2.99 -2.08 -1.17 -4.23 -22.87 -2.72 -2.14 -1.16 -1.87 -1.48 -3.28 -0.82 -4.32 - -3.24 - -2.58 -2.13 -4.62 -2.06 -2.83 - -1.71 -3.29
-2.91 3.01 3.22 -1.38 0.34 1.12 0.58 0.86 0.48 -2.39 -5.28 - -2.91 - -1.79 0.92 0.57 0.66 -3.16 -0.39 1.89 2.81 -1.12 0.17 0.89 -1.34 -3.39 - -5.83 -7.37 -3.46 -4.58 - - - - - -2.46 - -4.54 - - -3.47 -3.58 -4.47 -2.5 -4.21 -
- 4.46 2.87 -0.71 2.9 -0.79 -0.64 -0.68 1.38 -3.36 -2.65 - -2.59 -3.44 -2.46 - -2.67 -1.46 - -2.3 - -0.72 - 0.6 0.07 -2.01 -4.0 - -2.43 -2.77 - - -4.26 - - - - -3.72 - - -1.63 -1.79 -2.45 - - - - -5.41
-0.46 4.38 2.36 -1.04 -5.26 -0.6 -1.08 -0.92 -3.36 - - -8.28 -5.38 -9.28 -9.5 -2.72 -3.0 -1.92 -4.99 0.8 1.75 2.34 - 1.16 2.58 -7.91 -5.12 -7.15 -4.82 -8.4 -9.58 - -8.87 -8.21 -7.61 -8.47 - - -7.21 - - - -8.57 -8.63 - - - -8.28
- 4.67 - - - - - - - - - - - - - - - 4.5 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
0.43 3.93 0.84 2.2 1.18 0.77 0.29 0.43 0.89 -2.72 -4.96 -4.47 -2.75 -3.56 -3.19 -0.04 1.95 0.1 -0.68 -0.83 -1.57 -1.95 -3.09 -2.17 0.91 1.34 0.29 -2.48 -3.46 -3.55 -2.66 -3.78 -3.23 -3.09 -3.9 -3.16 -2.17 -1.88 -4.25 -3.44 -4.35 -2.77 -3.02 -3.6 -4.12 -2.23 -3.9 -4.42
- 4.23 - - - - - - - - - - 1.95 - -0.38 - - - - - - - - - - 3.06 - 1.32 2.35 -1.21 1.77 - - - - - - 1.04 - - - - - 0.76 - - - 0.2
- 3.28 - - - - - - - - - - - - - 4.81 3.35 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- 4.29 - - - - - - - - - - - - - 4.83 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- 5.18 2.73 1.46 - - - - - - - - - - -1.86 - 1.09 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-0.8 4.17 2.97 2.09 2.93 1.93 -2.15 1.96 -1.55 -7.1 -6.85 -6.17 -5.35 -7.34 -8.69 -0.91 -6.09 -4.64 -3.97 -5.0 -6.67 -5.42 -7.75 -1.0 -5.64 -5.13 -6.93 -7.48 -7.49 -7.64 -7.03 -7.27 -7.39 -8.03 -7.4 -7.38 -7.29 -7.51 -7.99 -8.17 -7.61 -8.69 -7.83 -8.7 -8.41 -7.71 -7.99 -9.18
- 5.04 - - - - - - - - - - - - -2.22 - - 2.13 - - 2.97 - - - - - - - - -0.06 - - - - 0.87 - - - - - - - - - - - - -
- 3.14 - - - - - - - 0.54 - - 2.5 1.95 - - - 3.45 - 1.93 - - - - 2.31 1.69 - - - -2.19 - - 0.44 - - - - - - - 1.87 - - - - - - -
- 3.43 1.48 0.95 0.92 2.13 -0.06 0.98 1.99 -1.42 -0.59 -0.41 -2.82 - -1.75 1.42 0.89 -0.43 -0.45 1.76 0.78 -1.19 0.77 -2.71 0.6 -1.38 -1.27 - -3.34 -3.64 -4.03 - -3.6 - - -3.09 -2.6 - -2.34 -2.41 -2.23 - - - - - -3.09 -4.98
- 4.4 - - - - - - - - - - - - -1.78 4.09 2.3 2.21 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- 3.22 -1.32 - -1.85 -1.44 - - - -1.06 -2.42 -0.68 -1.95 -0.49 -0.16 - 1.29 2.36 - 1.5 -0.03 -0.56 -0.88 1.32 -0.6 0.76 -2.25 -0.01 -1.84 0.32 -0.83 -1.45 -0.36 -0.79 - -2.43 -0.79 1.23 - 0.4 0.06 - - 0.69 0.11 1.07 -0.22 -0.26
- 4.48 3.41 - - - - - - - - - - - - - 1.99 - - - - - - - - 3.48 - - - - - - - - - - - - - - - - - - - - - -
- 3.56 -0.08 1.46 -0.08 0.54 -2.17 -1.82 2.57 -1.81 -0.09 -0.0 -0.89 -2.11 0.14 1.04 -0.47 0.01 -0.12 -2.85 0.8 1.89 - -0.06 0.05 0.97 -1.66 - -4.03 -2.06 -1.5 -3.44 -5.03 -4.29 -5.93 - -5.02 -3.19 -5.04 -1.54 0.48 -0.31 -1.7 -0.74 -3.19 -2.37 -3.13 -2.54
- 5.58 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- 5.03 -1.39 2.02 -2.25 - - - - - - - - - - - 2.86 -0.28 - - - - - - - 1.37 - - - -5.08 - - - - - - - - - - - - - - - - - -
- 5.21 - - - - - - - - - - - - - - - 3.45 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- 3.05 2.87 - 0.96 2.33 -0.82 1.19 - -2.51 - - - - -5.11 3.14 0.14 0.99 - 0.11 0.81 - - 1.18 1.5 0.56 - - - - - -2.21 - - - - - -1.04 - - - - - - - -2.06 - -2.73
- 3.49 0.15 -2.06 -1.9 1.33 1.34 -0.28 - -5.25 - - - - -6.86 -3.37 0.49 3.6 1.22 0.45 -1.75 -1.25 -0.47 2.31 1.94 0.54 - - -3.31 -6.96 - - - - - - - - - - - - - - - -4.09 - -4.75
0.69 4.31 3.3 2.39 2.23 1.21 -0.15 -0.23 -0.61 -6.79 - - -5.72 - - 0.64 -4.01 -4.66 -4.93 -3.82 -5.85 - - -6.07 - -4.01 - - - - - - -7.11 -6.41 -6.36 - - -4.89 - - - - -5.76 -5.25 - - - -7.51
- 3.66 1.38 0.72 1.92 2.49 1.21 2.16 1.0 -3.26 - - -0.91 - -3.34 1.76 -1.98 -0.06 -1.17 -0.75 -1.09 -0.3 - -2.17 -0.55 -2.0 - - -3.24 -1.72 - - - - - -3.81 - -0.34 -3.34 -3.11 -3.51 -3.66 - -2.23 - 0.02 0.18 -4.01
- 4.09 3.58 - - - - - 1.09 - - - - - -4.63 - 1.82 -1.14 - - - - - -0.31 - 3.5 - - - -3.65 - -0.59 - - - - - - - - - - - - - - - -
- 4.09 2.32 - 0.23 3.08 - - - - - - - - - 2.04 - - - - - - - 1.44 - 1.64 1.49 - - - - - - - - - - 1.86 - - - - - - - - - -
0.78 3.76 2.81 2.21 -0.19 -0.28 1.32 1.72 -0.74 -8.79 - - - -7.76 -9.22 -1.85 1.73 1.2 -0.35 -2.61 -3.37 -3.92 -0.06 - -2.56 2.23 -2.67 - - - - - - - - - - -5.94 - - - - - - - -7.38 - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.