Heatmap: Cluster_3 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Egg cell
Ovule
Uninucleate microspore (Col-0)
Uninucleate microspore (Ler-0)
Pollen (bicellular, Col-0)
Pollen (late bicellular, Col-0)
Pollen (bicellular, Ler-0)
Pollen (tricellular, Col-0)
Pollen (tricellular, Ler-0)
Pollen (mature, Col-0)
Pollen (mature, Ler-0)
Sperm
Pollen tube (Col-0)
Flower (receptacles)
Flower (floral buds)
Flower (sepals)
Flower (petals)
Flower (stamen filaments)
Flower (anthers)
Flower (carpels)
Flower (stigmatic tissue)
Pedicel
Axis of the inflorescence
Silique
Silique (senescent)
Pods of siliques
Pods of siliques (senescent)
Embryo
Endosperm
Seed
Seed (young)
Seed (germinating)
Seedling
Seedling (etiolated)
Meristem
Stem (internode)
Stem (internode, senescent)
Stems
Leaf (rosette)
Epidermis cells
Mature guard cells
Root (differentiation zone)
Root (elongation zone)
Root (meristematic zone)
Root (apex)
Root (stele)
Root (QC cells)
Root (tip)
- -3.12 - - - - - - - -8.79 - - - 1.56 0.47 0.01 -5.42 -2.71 2.65 -2.89 - -4.95 -5.93 -3.74 -1.13 -3.9 2.41 -4.92 -1.14 -5.0 -4.69 0.1 -0.24 0.32 2.39 -0.09 2.38 0.54 0.59 - - 2.29 -2.07 -7.59 1.33 2.1 - -5.03
-0.4 0.36 - - - - - - - - - - - -0.95 - 1.65 - -13.22 -1.31 0.17 -0.43 -3.0 - -3.28 1.61 -0.62 -10.01 - -1.04 2.18 -0.74 1.25 2.78 -0.82 3.03 - -0.58 0.54 1.49 - - 2.5 0.86 - - - - -3.35
3.76 3.76 - - - - - - - - - 3.72 - - - - - - - - - - - - - - - - - - - - - - - - - 2.95 - - - - - - - - - -
-0.84 0.61 -6.77 -6.11 -4.97 -6.4 -5.95 -8.68 -9.25 - - - -8.31 -0.47 0.29 0.36 -0.47 -2.55 -1.65 1.55 2.21 -1.76 -1.99 -0.86 -2.68 -0.71 -0.62 -4.03 -4.13 -3.4 0.1 1.2 1.43 2.27 0.22 -2.32 1.39 0.36 1.83 -1.83 -2.11 2.45 0.93 -3.66 1.64 -7.72 - -1.76
- -3.7 -2.54 -5.14 -5.6 - - - - - - - -3.83 -0.07 1.58 0.95 - -2.96 -2.11 -1.68 -2.1 -1.57 -2.78 -1.34 -5.4 -0.83 -3.13 - - -5.88 -5.26 1.94 2.79 -0.26 3.96 3.08 -1.16 0.26 0.83 - - - - - -2.23 - - -
- 0.5 - 1.56 - - -0.42 - - - -0.69 - - 2.6 -0.98 - - - -2.67 -1.22 - 1.36 0.27 -1.32 - -1.56 - - -3.4 -3.85 -1.53 -1.83 1.74 -0.6 3.08 1.12 -1.94 2.72 -1.41 - - 1.53 1.83 - 0.03 - - -1.08
-2.25 -0.3 -4.54 -4.2 -6.96 - -6.46 - - -7.84 - - - -1.92 -1.97 -7.42 - - -3.16 -1.11 0.05 -6.45 -6.52 -2.44 -5.76 -3.07 -5.37 -6.38 -0.72 -8.35 -1.27 1.35 1.89 3.06 -1.72 -0.94 -0.85 -0.61 2.44 -2.85 - 3.8 1.29 -4.83 2.23 - - -4.99
-7.55 0.09 - -5.48 - - - - - - - - - 1.91 -0.59 -5.39 - -3.55 3.24 -1.05 -0.01 -4.91 -0.1 -2.17 - -2.54 - -5.36 - - -1.94 -4.94 0.12 0.37 2.87 1.83 1.82 1.98 -6.18 - - 2.79 -2.07 -4.8 0.85 - - -
- -2.56 - - - - - - - - - - - -0.34 - - - - -0.42 -1.44 - - - 4.23 - 3.04 - - 2.01 - 1.55 - 2.56 - 2.4 - - -0.74 -2.26 - - - - - - - - -
- -4.42 - - - - - -5.58 - - - - - -0.4 - -5.08 - - -5.84 -4.45 -5.2 -2.69 -0.81 2.1 -2.82 0.08 - -2.14 4.84 - 1.04 -4.61 1.61 -6.1 2.4 -1.74 -1.84 -0.56 -2.25 - - - - - -4.98 - - -
- - 1.33 0.39 - 0.96 2.76 - - - - - - - - - - - - - - -2.37 - -7.45 - - - - - - - -1.61 -3.16 0.19 2.64 - - -0.36 -4.69 - - 2.52 2.05 - 4.06 - - -
-4.89 0.12 -6.07 -5.88 - -3.18 - - - - - -3.82 -2.87 1.3 -0.05 -2.33 -6.07 -3.48 -1.96 -0.67 - -0.39 1.53 0.44 -2.11 0.4 -1.69 - 0.57 0.05 -0.5 0.22 -0.24 -3.65 1.58 1.18 3.91 3.17 -2.23 - - -3.29 -3.79 -3.62 -5.79 - - -4.39
-2.51 0.9 - - - - - - - - - - - 0.47 0.14 0.3 -1.05 -2.47 -2.09 0.92 - 0.03 -0.39 -1.89 - -1.24 -0.87 1.19 -2.85 - -0.02 -0.33 0.79 1.74 3.11 0.85 -1.83 1.42 1.56 -3.54 - 2.31 0.67 - 2.03 - - -3.85
-5.34 -2.29 -5.97 -4.81 -5.23 -1.88 -2.84 -3.23 -3.39 -4.07 -4.97 -12.06 -3.03 0.01 -1.22 -0.23 0.73 -0.0 0.92 -0.64 -1.0 0.15 -1.48 -2.25 -1.58 -1.41 0.73 -3.64 -1.18 -3.06 -3.56 0.83 0.93 1.55 -0.85 -1.56 0.64 0.05 2.23 0.43 2.28 2.72 2.25 -2.45 0.37 - -13.67 -1.78
-4.0 -3.86 - - - - - - - - - - - -1.2 -4.49 -2.72 -0.93 -0.18 -3.0 -3.41 -3.59 -0.01 -0.26 -3.73 -4.44 -2.96 -0.89 -3.57 -5.4 -6.1 -4.93 0.6 1.17 1.72 1.44 1.61 2.12 1.8 1.09 -2.4 -4.16 2.36 1.52 0.51 1.58 1.27 1.81 0.47
-2.44 1.46 - - - - - - - - - -0.01 - 2.68 - 1.8 0.57 - - -2.28 - -0.66 -0.25 -3.16 - -0.72 0.64 - - - - -1.92 -1.34 -1.13 -1.31 -0.22 3.04 3.75 1.6 - - 0.77 - - - - - -
-1.41 1.01 - - - -2.85 - - - - - - - 0.18 1.48 -1.76 1.54 2.42 -4.79 -1.14 -2.18 -0.81 -1.22 1.24 -2.82 1.64 -1.8 -0.93 -5.31 -3.47 -1.42 1.94 1.74 2.36 0.42 -1.04 -2.22 1.0 0.52 -3.01 - -0.47 1.39 0.62 0.21 - - -1.22
-6.25 -0.27 - -7.44 -7.64 - - - - - - -9.63 - 0.07 1.96 -0.53 1.56 1.53 -4.76 0.4 0.51 2.13 -0.29 -1.12 -9.44 -0.34 - -3.11 -9.04 -7.62 -1.44 -1.11 -1.08 0.55 -2.08 1.97 -3.82 -0.07 -2.0 -5.09 - -0.8 0.41 -3.72 -0.92 3.94 - -1.97
0.81 -5.41 - -1.93 - - - - - - - - - - - - - - -3.96 -3.66 - - - -2.05 - -2.07 - - 3.03 - - -4.21 - - 2.32 - 3.56 4.35 - - - - - - - - - -
- 1.16 - - - - - - - - - - - 2.92 - - - - - - - - - -1.98 - - - - - - - - 4.23 3.9 - - - 1.69 -0.02 - - - - - - - - -
- 1.61 - - - - - - - - - - - 3.53 - - - - - - - - - -0.36 - - - - - - - - 3.07 2.13 - - - 4.19 0.55 - - - - - - - - -
-1.06 0.53 - - -2.81 - - - - - - - - -3.11 - -1.53 - -1.18 -1.26 -1.56 - - - -2.84 - - - - -4.06 - 0.1 -1.3 2.37 1.81 -5.14 - 0.04 3.96 3.08 - - 1.6 - - 2.5 - - -2.84
-8.74 -5.59 -6.13 - - - - - - - - - - -1.93 -3.59 -4.48 - -5.98 0.09 -7.01 - - - -0.59 -2.68 0.34 0.05 -5.54 -3.48 -7.4 -5.81 - -6.51 -7.42 - -2.85 4.87 3.71 -1.19 - - -3.66 - -2.66 - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.58 - - - - - - - - - -
- -8.1 - - - -5.18 - - - - - - - -6.05 -3.73 - - - -5.54 -5.15 0.11 - - -7.01 - -5.9 -2.86 - -5.22 -4.98 - -1.84 -1.21 -2.94 5.44 - - 1.19 -5.15 - - - -4.71 - -4.7 - - -
-5.61 -1.71 -8.24 -6.28 -8.1 -5.19 -6.62 - -8.26 -9.76 -9.25 -6.22 -8.0 -0.13 -0.39 1.88 -2.9 -2.24 -3.63 -0.14 -1.81 0.02 -1.21 0.55 1.02 1.95 -1.1 -6.37 -3.2 1.14 -4.46 1.28 -0.01 0.69 -3.99 -0.97 1.93 0.54 1.07 -1.67 0.39 2.38 1.89 0.21 -0.67 -2.69 0.82 0.8
- -3.94 -4.01 - -4.5 -4.67 -7.73 - - - - - - -5.76 -4.71 -5.11 - -4.23 -5.56 -5.52 -5.91 -3.41 -2.98 -6.01 -5.7 -4.29 -3.85 -4.45 -4.42 -4.54 - -0.07 1.61 0.15 4.8 1.13 0.99 1.84 -0.3 -3.38 - 2.13 -2.64 - -0.05 - - -
-5.4 -5.47 - -9.63 - -8.42 - - - - - - - -9.78 - -10.96 -9.8 - -6.9 -4.45 -9.85 - -9.74 -2.24 3.09 -0.4 4.34 -9.6 -5.34 2.91 -6.15 0.06 0.7 -1.59 -9.06 - -7.87 -2.85 2.21 -3.58 - -0.76 0.93 -6.73 -2.67 - - -4.3
-5.83 -6.15 - - - - - - - - - - - -23.9 - -24.27 -23.65 - -8.56 -5.64 - - -27.75 -2.3 3.5 -0.42 4.41 - -5.28 2.48 -6.42 0.42 1.12 -1.75 -28.53 - -7.96 -3.67 1.68 -3.72 - -2.23 0.31 - -3.25 - - -4.61
- -5.94 -3.77 -4.45 -2.43 -3.26 -4.8 - - - - -6.89 - -3.23 -3.37 -4.02 - - -6.38 -3.44 - -3.29 -4.37 -4.03 -3.21 -1.77 - - - -4.2 -3.41 -2.93 4.01 1.34 2.95 1.85 1.53 1.41 -1.19 -2.82 - -0.63 -2.35 -0.07 2.83 - - 0.27
- -5.57 - -8.64 -6.26 -3.8 -7.1 -6.21 - -8.68 - - -9.58 -1.69 -3.2 -1.95 -6.83 -5.94 -9.5 -5.59 -4.9 -0.43 -4.61 2.47 -7.45 2.46 -6.85 - -9.0 -5.44 -4.88 -2.08 2.51 3.54 -3.32 3.34 0.8 1.46 0.54 - - 0.1 - -8.05 -1.65 - - -
-2.28 1.08 - - - - - - - - - -2.34 - 1.38 0.97 0.4 -1.46 - -5.72 1.42 -2.0 1.22 1.98 2.09 -3.51 1.48 -1.24 1.3 1.41 - -1.13 -1.2 1.38 -2.86 1.22 1.92 - 2.33 -0.29 -0.36 - -1.52 -2.44 - -1.43 - - -4.24
- -3.86 -4.27 - -5.61 - - -6.52 - - - - - 0.89 -1.24 -0.58 -3.79 - -3.8 -4.06 - -4.31 -1.06 -1.53 -6.42 -0.74 -1.45 - -1.86 -1.22 -4.14 -0.56 0.51 -2.56 2.94 2.64 3.54 1.71 1.43 - - 0.63 -3.34 - 2.69 - - -2.99
-5.9 0.95 - - -2.98 -1.97 - - - - - - -2.21 2.66 0.18 0.82 -1.47 -1.86 -2.7 0.64 -0.35 0.2 0.09 -1.1 -6.39 -0.64 -3.35 0.27 -7.4 -5.72 -0.19 0.06 2.19 0.14 3.12 0.66 1.57 2.45 0.44 - - -1.52 -4.31 -5.3 -1.36 - - -7.07
-2.25 -0.22 -6.81 -5.15 -7.1 - -5.94 - - -8.74 - - -1.48 0.48 0.31 0.17 -0.26 -0.94 -1.94 0.34 0.18 0.83 0.99 0.07 1.51 0.65 0.55 -0.68 -0.38 1.74 -1.44 0.8 0.52 0.7 0.37 0.79 1.43 0.75 0.59 -0.42 0.21 0.78 -0.02 -0.43 -0.22 - 1.36 -1.11
1.05 1.43 -1.44 -2.04 -1.55 0.73 -0.51 0.04 - -1.59 - -0.76 - 0.25 1.38 -0.69 0.98 0.11 -1.47 1.4 -2.14 0.12 -0.11 -0.95 -3.86 -1.33 -1.97 -0.02 1.6 -3.05 0.16 0.81 -0.32 0.23 1.27 1.11 -2.62 0.52 -1.6 - - 1.1 1.43 0.78 -0.34 - - 0.27
-7.9 -2.27 -4.86 - - -2.91 -4.72 -4.07 -2.15 -5.34 - - - -2.88 -2.16 -3.78 -0.24 -3.27 0.2 -0.21 - 0.48 0.62 -1.85 1.75 -1.35 - -3.7 -2.74 -5.01 -5.24 1.46 2.77 2.87 2.61 1.93 -3.21 2.93 -2.07 - - -2.82 -1.03 - 0.23 - - -
- -7.86 - - - - - - - - - - -4.31 -6.3 -0.95 - - -4.0 2.03 -5.46 - - - - - - - - - -6.35 - - 2.41 -5.37 4.7 - - 3.39 -8.5 0.44 - - - - -4.52 - - -
-10.37 -1.92 - -7.84 - - -6.42 - -7.18 -8.33 -7.91 - - 0.44 -1.74 0.71 -3.49 -2.45 -4.1 -1.23 -3.66 2.76 1.17 1.64 -8.22 2.0 -5.62 -5.11 -1.31 -5.98 -5.41 0.33 2.05 1.55 -1.61 3.23 1.58 2.17 0.46 -4.94 - - - - -6.14 - - -
-7.47 -0.62 -7.9 - - - -6.64 - -9.38 - -9.05 -1.62 -6.34 0.2 -0.32 -2.26 1.31 -0.46 1.15 -1.14 1.23 -0.04 0.11 -0.93 2.61 -0.63 -3.4 -8.89 -1.69 2.92 -2.07 0.21 -0.55 -0.8 1.24 1.91 2.27 1.2 -1.26 - - 0.38 -1.18 -8.33 0.35 - - -10.1
-2.48 -0.03 -3.91 -3.07 -5.19 -5.17 -4.52 - - - -6.99 -5.24 - -0.17 0.72 0.27 0.55 -0.34 -1.72 0.1 -1.66 -0.0 0.48 -0.42 -1.55 -0.11 1.24 -1.18 0.56 -1.89 -0.95 -0.43 0.08 0.22 0.2 1.27 1.53 0.94 0.35 0.01 2.91 0.74 0.24 -1.12 0.3 -0.45 1.21 -0.54
- -0.58 - - - - -6.11 - -7.07 - - - -7.0 1.2 0.9 1.88 0.74 0.55 -0.01 0.82 -4.68 -0.86 -3.09 2.29 -0.54 2.31 3.47 -2.53 1.01 -3.55 -0.23 -1.16 0.33 0.07 -1.24 -1.48 -2.26 0.8 -0.56 -6.11 - -1.09 0.44 -6.06 -4.65 - - -4.28
-6.52 -2.67 -9.1 -6.49 -7.33 - - - - -10.81 -10.94 - -9.34 1.35 -1.07 -0.56 0.3 1.34 -0.3 -2.61 -5.68 -1.68 -1.35 -0.51 -0.74 0.33 3.37 -5.88 -5.34 -7.32 -5.3 -1.42 1.21 1.89 0.68 0.57 2.06 0.36 2.39 -1.27 -1.56 0.23 1.41 -1.94 -0.94 -4.52 -6.41 -3.62
2.06 0.44 - - - - - - - - - - - 0.88 2.23 - - - - - - - - 0.28 - - - - -1.12 - - - 4.86 0.02 - - - 1.86 -0.54 - - - - - - - - -
-3.98 1.19 - -2.42 - - -4.39 - - - - - -5.18 3.11 2.26 1.42 1.47 -0.21 -1.54 -0.05 -1.23 1.01 -0.14 0.85 - 1.39 -0.91 - -4.7 - -2.15 -0.73 1.92 -0.99 2.78 -1.89 -0.25 -0.13 0.97 - - - - - -4.39 - - -
- -1.28 - -2.58 -1.38 -0.14 -2.94 - - - - - - 0.55 - -0.33 -1.68 -3.89 -1.73 -0.23 -1.23 -0.14 0.59 -0.45 -0.93 0.32 -0.1 - - -1.64 - -0.33 2.87 -3.89 3.75 -0.24 3.11 1.05 0.51 -2.38 - - - -2.9 -0.68 - - -
-6.88 -1.58 -6.35 -6.53 -8.68 - -7.41 - -8.57 -10.9 -7.71 -7.73 -3.43 -1.02 1.38 -0.05 0.35 -0.86 -0.31 -2.06 -1.93 -1.49 -1.09 -1.79 -1.56 -0.88 2.26 -1.61 0.8 -5.06 -3.06 2.13 0.8 0.89 -1.1 -2.11 -3.21 -0.12 1.93 -1.57 -2.66 1.73 2.61 0.57 0.43 -1.43 -11.17 2.23
-0.59 1.06 -1.85 -1.52 -0.49 -1.47 -1.06 -5.67 -6.95 -9.07 -6.66 - - 0.72 0.48 0.08 0.15 0.22 -2.93 0.65 0.02 0.05 0.38 0.0 -0.64 0.28 -1.89 -0.6 0.88 -0.37 0.19 0.61 0.93 1.16 0.48 0.93 1.94 0.88 1.61 -2.41 0.68 -0.0 0.08 0.44 -0.79 -6.19 - -0.77
-3.43 1.99 - -6.64 -6.74 -7.01 - - - -8.38 -5.93 -2.71 -4.52 -0.02 0.53 -0.16 -3.08 -3.94 -3.14 2.48 -2.98 -0.18 0.98 0.25 -3.48 -0.73 -3.27 -4.61 0.54 -5.52 -0.79 -0.75 2.09 2.33 0.86 -0.68 2.93 2.15 0.79 -7.69 - -0.54 - - -0.6 - -12.22 -
0.72 1.36 1.97 0.79 1.07 -2.87 1.42 - -3.86 -4.83 - - - -0.75 -1.42 0.24 -3.39 -2.19 -0.4 1.17 - 0.57 -0.97 0.69 -0.64 -0.7 -0.99 -1.69 2.18 -0.44 2.55 -0.43 -1.39 - 1.2 -0.23 1.44 1.23 -2.03 - -0.31 - - -2.82 - - -2.53 -2.99
-0.28 -1.74 - - - -5.54 - -6.75 - -7.56 - 0.84 -2.05 1.21 -1.44 -4.42 -5.35 -3.31 -0.65 -0.84 -2.72 -2.64 -1.6 1.82 1.42 1.72 3.76 -0.21 1.68 -0.56 2.43 0.9 0.52 0.09 -1.9 -1.43 -5.24 0.53 -4.03 -3.82 -2.52 - -4.54 - -3.95 - - -
0.61 1.44 - - - - - - - - -5.08 1.7 -0.79 1.24 -2.37 -4.61 -4.11 - -0.61 -0.59 -5.02 -4.88 - 1.64 0.98 1.38 3.43 0.73 0.46 -0.96 2.3 0.3 0.89 0.34 -2.0 -1.78 - 1.03 -3.88 -2.3 0.48 -2.03 -4.97 - -3.62 - - -
-3.52 -3.0 -1.7 - -3.7 - -1.65 -4.13 - -5.34 - - -2.46 - - -4.63 - - 1.68 -0.94 - 1.28 -0.26 -3.59 -0.74 -3.69 -0.26 - -2.88 -2.23 -4.49 -3.35 3.39 1.12 2.04 -1.28 -1.0 -1.71 1.59 1.97 - -2.61 - - 3.66 - - -
-1.19 0.82 -1.39 -2.58 -1.62 -2.6 -1.22 -5.48 -5.97 -5.12 -6.1 - -3.71 -0.2 -0.48 -0.71 -1.46 -1.76 -2.39 0.11 -2.59 -1.45 -0.58 0.35 -0.83 -0.91 -1.3 0.91 1.94 -0.56 1.02 0.73 0.74 0.66 0.68 -0.24 2.28 0.75 0.32 -1.41 -3.54 -0.24 0.92 2.02 1.27 - -4.16 1.46
0.54 1.22 1.46 0.52 1.62 1.05 0.91 -0.95 -1.85 -2.33 -4.29 -2.49 -2.98 -0.23 0.19 0.7 -0.08 -0.06 -0.92 0.77 -0.22 0.69 0.35 -0.35 -1.63 0.07 -1.44 -0.1 -1.96 -1.82 0.17 0.55 -0.1 0.67 -1.39 -1.37 -0.22 0.45 1.08 - - 0.54 -0.25 0.59 0.31 - -11.1 -0.17
3.69 - - - - - - - - - - 5.13 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-3.44 -4.71 - - - - - - - -6.94 - - - 2.77 2.28 3.65 -4.62 -4.15 -4.3 -4.54 -4.66 - - -1.81 - 0.13 -5.55 - -4.85 - -4.25 3.07 0.24 -4.17 -4.82 - -0.99 2.03 2.93 - - - - - - - - -
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1.28 0.44 2.07 0.11 2.07 0.41 -0.09 -7.04 - -5.16 - -7.31 - 0.89 0.6 0.83 0.96 1.5 -1.15 -0.56 -1.5 0.34 0.26 0.19 -3.72 0.41 -0.4 -1.34 -0.12 -3.29 -0.08 -1.96 0.2 0.28 0.75 1.4 0.57 0.32 0.15 -4.77 - -0.62 -2.82 -3.31 0.01 -5.08 - -2.6
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.