Heatmap: Cluster_3 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Archegoniophore (female)
Antheridiophore (male)
Antheridium (male)
Sperm
Sporeling
Thallus
Thallus (vegetative)
Thallus (MpPAP1OX-1)
Thallus (Tak1-2)
Thallus (MpPAP1OX-3)
Thallus (MpPAP1OX-2)
Thallus (Tak1-3)
mid rib (male)
Gametophyte
Gemmaling (female, hpt2040)
Gemmaling (male, hpt2040)
Gemmaling (BC3-38)
Gemmaling (Tak1)
Gemmaling
Gemma cup
gemma cup (male)
Aseptically grown rhizoids, thalloid, gemmae
Control
Cold (3°C)
Dark (3 days)
Heat (33°C)
Light (435 uEm-2s-1)
Osmotic (100 mM mannitol)
Nitrogen deficiency (0 mM KNO3)
Salt (40 mM NaCl)
Cold-Dark
Cold-Light
Cold-Mannitol
Cold-Nitrogen deficiency
Cold-Salt
Heat-Dark
Heat-Mannitol
Heat-Nitrogen deficiency
Heat-Salt
Light-Salt
Mannitol-Dark
Mannitol-Light
Mannitol-Nitrogen deficiency
Nitrogen deficiency-Dark
Nitrogen deficiency-Light
Salt-Dark
Salt-Mannitol
Salt-Nitrogen deficiency
ZT2 (2 hours after light)
ZT6 (6 hours after light)
ZT10 (10 hours after light)
ZT14 (2 hours after dark)
ZT18 (6 hours after dark)
ZT22 (10 hours after dark)
1.33 1.04 3.95 4.14 - 0.63 2.67 - - - - - 0.77 - - - - - - - -5.61 - - - - - - - - - - - 0.19 - - 2.2 0.05 - - - - - - - - - - - - - - - - -
- 1.36 - 5.33 - -0.25 2.26 - - - - - 0.69 - - - - - - - - - - - - - - - - - - -0.43 0.67 -0.16 - - - - - - - - - - - - - -0.5 - - - - - -
-0.28 -1.5 -1.36 3.83 -2.04 0.4 1.42 -1.83 -0.39 -3.71 -1.43 -0.52 0.18 -0.98 -0.55 -1.99 -0.88 -0.14 1.68 0.2 0.06 -3.96 -0.42 0.15 -0.21 -0.62 -0.7 -0.76 -0.68 -0.95 0.59 0.02 -0.36 0.03 0.2 -0.96 -0.81 -0.92 -0.59 -0.66 -0.92 -1.58 -1.16 -0.26 -0.29 -0.96 -1.47 -0.67 -0.85 -0.42 -0.36 -0.93 -0.86 -0.81
- - - 5.57 - - 2.73 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-5.44 - -2.61 2.51 -3.31 0.19 1.69 -0.9 - 0.1 0.22 -1.56 -0.62 2.76 -2.02 -1.66 -0.78 -1.2 -0.36 - - 0.55 -1.07 -2.42 0.33 -2.2 -4.62 -0.49 0.36 -0.47 -1.1 -1.39 -1.08 1.41 -1.28 -2.34 -0.41 -0.49 -0.77 0.55 -0.28 0.42 0.43 1.03 1.63 -0.73 1.75 0.94 -2.31 -1.29 -1.5 -2.94 -1.52 -1.57
-1.89 - - 4.71 -0.99 -0.17 3.34 - - 1.3 0.38 - - - 1.66 1.17 0.25 -0.59 0.84 -0.17 - - - - - - -0.24 - - - - -2.5 - - -2.33 - - - -1.64 - - - - - - - - - - - -0.81 - - -2.19
-0.89 0.86 -0.36 2.73 - 0.12 1.58 -1.49 1.04 1.11 -0.24 -0.6 0.82 -0.2 -2.23 -1.95 -1.99 -1.25 - - - - 0.44 0.78 -1.24 0.11 1.75 0.15 -0.85 0.37 0.42 2.03 -0.83 -4.13 0.54 0.79 -0.24 0.65 -1.18 0.13 -1.62 -0.58 -2.1 -1.65 0.59 - -0.08 -0.6 -3.14 -1.73 -0.73 - -1.4 -2.32
-1.4 -0.05 -0.66 4.24 -2.02 0.66 1.96 - 1.44 - 0.17 1.97 1.28 -0.63 1.89 -1.3 -1.32 1.57 2.0 0.12 - - - -2.94 -2.74 -1.4 - - - - -1.12 -1.23 -3.22 -3.13 - -2.13 - -3.17 -2.41 -3.2 -0.88 - -3.53 -1.51 - -3.14 -3.32 - - - - -3.0 - -1.89
0.46 - 0.05 2.85 - 1.13 -0.8 - - - - 0.81 -1.3 -1.2 - -0.92 0.27 -0.74 0.43 - - -0.08 -0.36 1.41 -2.27 - -1.94 1.13 -0.06 -1.0 -2.59 1.76 2.72 1.97 2.41 - - -2.61 -2.73 - -2.63 -2.78 -1.29 -2.58 -2.64 - -0.43 0.23 0.27 -2.75 0.15 -2.41 -0.07 -0.8
-1.53 - -0.24 3.34 -0.19 2.45 4.87 - - - - - - - - - - - - - - 0.43 -0.92 0.31 - - - - - - -0.91 -1.73 - 0.74 - - - -0.41 - -3.04 - - - - -2.96 - - - -1.57 -2.79 - - - -
-0.37 -2.14 -9.18 -6.03 0.05 0.06 1.46 -0.33 1.1 -0.52 -0.35 1.41 -0.84 0.9 -0.48 -0.23 -0.41 -0.61 0.81 -1.14 -0.77 1.83 -0.25 -1.2 0.52 -1.19 0.24 -0.73 0.91 -0.76 0.1 0.27 -1.05 1.26 -1.18 -0.88 -1.49 -0.17 -1.38 -0.76 0.44 -0.76 -0.12 0.91 0.93 0.07 -0.67 0.36 -1.28 -0.72 -0.6 -0.46 -0.26 -0.55
3.1 3.44 - 2.78 - 0.74 3.1 - - 0.74 - - -0.16 1.9 - - - - - - - - - - - -0.87 - - - - 1.02 0.31 -1.68 0.0 -0.58 -1.59 - - 0.12 -1.65 -0.15 - - - -0.65 - - - -0.64 0.45 - - - -
-0.56 -0.79 - -0.64 -6.33 0.41 4.03 -1.48 -1.68 -2.98 -0.22 -2.72 -3.58 -1.77 -3.36 -2.59 -2.57 -3.13 -1.53 -1.2 -0.68 4.5 -4.75 -5.14 - - -7.02 -2.76 -0.16 -7.63 -3.89 -1.34 - 2.47 - - -7.81 -2.7 -6.76 -5.02 - -6.06 -3.41 - -3.84 - -4.11 -3.21 - -7.36 -5.97 -5.74 -5.6 -6.3
0.12 - - 4.94 -2.06 -1.0 2.21 - 1.32 -0.4 - - -1.22 -1.75 - - - - - -0.54 - - -0.93 -0.57 -0.38 -0.23 -2.03 -1.65 - -1.42 -2.58 - -2.69 -1.53 - -0.07 -2.04 -2.87 - -0.17 -1.84 -2.93 - 0.19 -1.7 -0.48 -1.89 -0.31 - - -1.14 -0.54 -0.83 -2.35
-0.45 -2.12 -3.23 -7.46 -1.61 0.01 1.04 2.57 2.89 1.9 2.51 2.39 0.83 -0.92 -0.29 -0.34 -0.07 0.23 -1.04 1.18 1.18 1.68 -0.62 -2.85 -3.04 -2.11 -2.06 -2.53 -2.26 -1.7 -3.65 -1.98 -2.96 -3.6 -3.23 -2.5 -2.38 -2.1 -2.39 -2.41 -3.08 -2.6 -2.51 -2.96 -2.29 -3.15 -2.48 -2.19 -0.98 -1.18 -1.79 -1.26 -1.89 -1.76
-0.39 -0.43 - 1.96 1.21 0.03 2.29 0.29 0.37 0.84 0.47 0.91 -2.82 0.83 -0.6 -1.01 -1.55 -0.96 -1.65 -0.99 -0.38 3.01 -2.38 -3.52 -2.5 0.09 -1.44 -1.11 0.68 -0.91 -3.43 -1.7 -1.76 -0.35 -1.37 -2.98 0.24 1.04 0.55 0.35 -1.15 -0.51 -1.04 -1.47 0.24 -1.4 -0.63 -0.25 -2.15 -1.33 -1.92 -1.33 -1.84 -2.76
1.79 0.34 -1.55 0.39 -1.5 1.01 2.87 -1.19 0.41 -0.43 0.12 0.71 0.06 0.57 -0.27 -0.36 -1.11 -1.31 -2.09 -1.4 -1.16 0.89 -0.38 -0.93 -1.38 0.08 0.06 -0.75 -0.24 -0.18 -1.76 -0.78 -1.7 -0.63 -1.23 -2.21 -1.01 -0.11 -0.4 1.05 -0.44 -0.07 -0.02 -0.29 1.15 -0.53 -1.16 -0.12 -0.52 -0.15 -0.37 -0.45 -1.08 -0.55
- - - 5.6 - - 2.35 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -1.23 - - - - - -
- - - 5.42 - -3.31 3.14 - - - - - - 0.34 - - - - - - - - - - - - - - - - - - - - - - - -1.1 - - -1.18 - - - - - - - - - - - - -
-2.18 -2.42 -0.83 -0.81 -0.15 0.27 2.16 - - -0.99 -1.57 - 0.45 -0.07 -2.51 -1.61 -0.15 -0.88 0.69 0.38 -0.05 -1.82 0.64 -0.97 0.75 -0.02 -0.96 0.69 0.34 -0.27 0.24 -0.04 0.55 0.06 -0.73 -0.21 0.54 0.57 0.17 -0.58 0.32 -1.31 -0.61 1.26 -1.39 -0.65 -0.41 0.23 -0.69 1.15 1.44 0.23 0.74 -0.37
-0.71 - - -0.08 -3.9 2.54 4.59 - - - -0.61 - - 2.28 - -2.44 - - - -0.56 - 3.83 -1.86 - - - - -2.88 -1.59 - - -2.17 - -2.83 -2.96 - -3.25 -2.81 - - -3.24 - -3.12 - - - - - - - - -2.87 - -
-1.68 - - 2.42 -4.25 -0.2 1.94 0.23 1.77 - 0.91 2.13 1.52 0.78 - -1.22 - - 0.74 -1.13 1.01 0.24 -0.63 -1.69 - -2.36 -0.92 -2.22 -0.58 -1.07 -2.14 -0.49 -3.26 0.09 -0.86 - -2.45 - -3.32 -0.21 0.54 2.26 -2.42 -1.73 0.99 -0.88 0.9 -1.7 -2.98 0.05 -0.75 0.05 -0.08 -1.31
-2.8 - - 3.82 -4.23 0.38 0.9 0.03 1.78 -1.14 - 1.57 -3.04 -3.6 -2.66 - -1.62 -1.54 -0.47 - - - -0.74 0.24 -2.14 -3.3 -3.03 -0.43 2.41 0.24 -1.73 -0.78 0.7 2.18 0.29 -1.79 -2.51 -0.59 -2.14 -1.86 - -2.45 -0.04 -1.98 1.64 - -3.78 -0.26 -1.27 -0.73 -1.11 -2.4 -2.32 -2.78
1.3 -0.51 - 3.54 -5.84 0.11 2.54 0.22 -0.06 -0.11 -1.4 -0.52 -0.67 1.24 -1.31 -1.83 -3.78 -0.79 - 1.99 1.97 1.29 -4.89 - -0.05 -4.0 -3.29 - -3.98 -5.93 -0.75 -5.88 -4.81 -3.74 -5.84 -2.06 -5.08 -3.09 -3.96 -4.82 1.28 -2.76 -6.09 1.75 -4.84 2.12 -4.39 -5.99 -4.09 -3.39 -3.81 -2.61 -3.39 -2.54
1.99 1.31 - 3.72 -0.51 0.83 2.67 -0.84 0.13 -1.65 -0.42 0.07 -1.32 0.56 0.74 1.28 -1.42 -0.14 - 1.34 1.41 1.66 -4.59 -4.87 - -2.29 -4.54 -3.61 -4.97 -3.05 -3.05 -4.18 - -5.08 -3.52 -2.08 -4.38 -0.7 -1.37 -2.77 -3.2 -5.25 -2.4 -2.16 -2.13 - -3.66 -3.26 - -0.31 -0.34 -0.26 -1.35 -3.85
-2.16 -1.56 - 4.24 - -1.28 1.01 - - - 0.29 -0.07 - -3.67 - - -1.61 - - - - -0.96 -3.55 0.11 -3.32 -3.73 -0.51 -0.68 2.28 -1.17 -2.61 -0.38 1.17 2.96 1.14 - -2.27 -0.64 -3.76 -0.66 - -2.2 -1.16 -3.58 1.3 - - -0.49 -1.04 -0.46 -1.02 -1.44 -1.94 -
-1.21 -2.19 - 4.06 -3.77 -0.66 0.63 0.49 -0.54 -1.78 0.19 1.41 -0.96 -2.6 -2.17 - - - - - - -1.48 -1.37 -0.42 -0.74 -1.17 -1.31 -0.11 2.07 -0.2 -1.48 -0.75 -0.11 1.62 0.0 - -0.79 0.57 -0.72 -0.01 -1.86 0.05 -1.14 0.27 1.24 -1.29 -2.31 -0.59 -1.43 -2.55 -2.84 -1.61 -1.1 -0.43
- -1.75 - 4.26 -4.08 -1.09 -0.22 -0.22 1.73 -1.51 -1.54 1.49 -0.74 -2.92 - - - - - -1.65 - - -1.28 0.62 -0.84 -2.06 -3.39 -1.15 1.93 -1.14 -1.07 -1.14 0.46 1.74 0.85 - -2.12 -0.95 -1.21 -0.45 - -1.7 -1.01 -1.24 1.22 -2.3 - -0.34 -0.84 -0.91 -1.16 -2.11 0.08 -3.68
1.25 -0.03 - -2.7 - 0.48 1.34 -0.62 -3.3 -0.53 -1.57 -2.35 -0.39 1.27 -0.66 -0.84 -0.67 -0.52 -0.88 -2.31 -2.47 -0.44 -0.3 -0.02 0.19 -1.04 -1.75 0.18 1.46 0.79 -2.13 -1.29 -0.01 1.07 0.36 -1.03 0.61 0.51 0.08 1.13 -1.32 -0.13 0.87 -0.09 -0.12 -1.73 1.09 0.73 0.34 0.36 0.32 0.59 0.05 -0.4
-4.1 0.36 - 0.73 -7.73 -0.75 4.39 -0.09 0.37 0.91 0.92 1.09 -0.71 1.59 -2.94 -3.12 -1.81 -1.32 - -2.68 - 1.42 -1.34 -2.16 -0.3 -3.58 -5.0 -0.78 -0.33 0.78 -1.52 -2.12 -2.52 -1.61 -1.37 -2.11 -2.59 -3.33 -3.85 -0.19 -0.06 -2.06 -0.78 -0.7 -2.64 -0.59 0.61 -1.02 -3.33 -3.64 -3.25 -2.98 -1.07 -2.27
0.32 - - 5.21 -1.34 -0.44 2.92 - - - -0.02 - 0.33 0.45 0.12 - -1.41 0.04 - - - - - - - -3.27 -1.66 -2.3 - - - - - - -3.33 - - - -3.56 - - - - - - - - - - - - - -2.11 -
0.06 -0.1 - -1.04 - 0.91 1.0 -1.04 1.75 -1.04 0.26 2.0 0.08 2.02 -1.27 -2.48 -0.16 -1.23 -1.75 0.61 0.39 0.74 0.76 -0.29 -3.09 -2.16 -2.04 0.31 1.5 0.1 -1.67 -0.24 -1.36 0.75 -1.53 -4.34 -2.32 -1.45 -2.23 -0.69 -1.33 -1.54 0.38 -2.34 0.67 -2.28 -1.47 1.0 -0.24 -0.19 -0.09 0.51 0.76 -0.21
0.03 -0.06 -1.41 -5.3 -0.5 0.24 0.52 1.02 1.65 1.19 1.3 1.62 0.15 0.8 -0.8 -0.89 -0.49 -0.69 -0.81 0.33 0.34 0.18 -0.22 0.47 -0.25 -0.1 -0.48 -0.47 -1.08 -0.34 -0.43 -0.54 0.42 -0.05 0.33 -0.96 -0.51 -1.07 -0.43 -0.24 -0.21 -0.54 -0.86 -0.48 -0.67 -0.42 -0.67 -0.74 -0.48 -0.76 -0.64 -0.04 0.25 0.33
0.38 - - 3.99 -1.79 -1.15 1.5 2.05 - 1.93 2.05 - - 2.52 - - - 0.42 - - - - -0.38 - - 1.13 0.27 0.58 - - - - - - - - 1.08 1.64 - -1.47 - -1.57 -0.79 - -0.45 - - - - - -1.37 - -1.35 -1.08
-1.04 0.48 - 2.74 -0.91 -1.19 2.3 0.07 2.01 0.44 1.32 1.95 -0.08 2.08 -0.51 -1.39 -1.44 - - -1.31 1.42 0.07 -1.58 -1.08 -1.16 -1.82 -0.52 -3.74 0.61 -2.04 - -1.35 -2.6 0.97 -1.58 -1.31 -2.84 -1.66 -1.44 -3.7 -2.06 1.93 -1.12 -3.72 1.18 -2.04 - -3.72 -1.77 - -2.59 - -3.48 -
3.37 1.42 - -0.59 0.89 0.09 2.67 1.05 -0.85 -0.36 1.0 -0.13 -1.46 2.21 2.28 -4.49 -2.86 -5.86 1.67 -0.68 -1.86 -0.94 -1.71 -3.04 -5.33 -1.14 -1.65 -2.31 -0.64 -0.67 -6.65 -1.87 -2.88 -1.63 -1.85 -3.75 -2.02 -1.28 -1.41 -0.05 -4.94 -2.54 -1.06 -2.78 0.13 -3.08 -1.39 -1.06 -1.31 -2.78 -2.2 -2.34 -2.21 -2.28
-1.8 0.07 - -0.8 -10.48 0.91 2.65 -0.66 2.47 -0.54 -0.58 2.67 1.61 1.53 -1.49 -3.89 -0.53 -0.96 -1.6 1.31 1.46 -4.57 0.26 -0.5 - -3.13 -0.75 -1.52 0.41 0.15 -7.55 -1.0 -1.3 -0.6 -0.25 -9.27 -7.49 -4.71 -3.14 1.72 - -2.39 -1.18 - 1.1 - -2.52 0.47 -2.33 -1.53 -0.83 -2.93 -6.45 -8.93
2.32 - - 5.26 1.52 - 2.98 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-0.95 - - 0.89 -2.23 0.76 2.06 -2.0 - -2.3 -3.33 0.2 -0.75 3.87 2.89 1.31 -0.85 -1.7 0.31 -2.41 -0.24 1.52 -1.49 -1.82 -2.46 -2.22 -1.69 -0.52 0.82 -0.96 - -2.77 -1.14 0.28 -2.64 -3.06 -1.61 -0.9 -2.27 -1.8 -3.45 -1.92 0.17 -2.0 0.37 -5.65 -1.22 -0.07 -3.31 -2.73 - -2.9 -3.48 -3.47
- - - 4.76 - - - - - - - - - - - - - - - - - - - - - - - - - - - 4.75 - - - - - - - - - - - - - - - - - - - - - -
- - - 2.13 - 2.89 4.64 - 1.58 - 3.83 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
0.51 -0.06 -2.21 1.61 -0.94 1.37 1.95 -1.2 0.87 0.07 -0.86 1.42 -1.76 3.37 0.19 0.17 0.62 0.14 0.01 -0.51 0.1 - -0.93 -0.75 -3.16 -1.28 -2.84 -0.59 0.3 -2.21 -2.91 -0.83 -0.12 0.97 -0.68 -5.8 -1.0 -0.62 -0.91 -1.81 -2.33 -1.88 -0.21 -2.67 -0.4 -4.95 -1.13 0.42 -1.02 -1.56 -1.34 -1.38 -1.39 -1.26
-0.49 - - 1.34 -1.75 1.49 1.07 -1.88 1.0 -0.53 -1.17 0.98 -1.77 3.77 1.14 -0.84 0.5 0.17 0.33 0.27 -0.56 1.66 -1.58 -0.99 -3.98 -0.73 -3.62 -1.38 0.79 -2.05 -3.32 -1.86 -0.82 1.69 -0.8 -4.66 -1.74 -0.63 -2.12 -3.28 -3.22 -2.63 0.21 -5.41 -0.64 -3.64 -0.8 0.07 -3.26 -2.57 -2.06 -2.81 -3.25 -4.07
-1.59 -1.82 - 2.93 - 0.99 5.36 - - - - - -2.22 -2.78 - - -2.75 - - - - - -4.85 - -4.2 -2.71 - -3.59 - -4.95 - -2.02 -4.85 -2.67 -2.38 - -3.55 -4.86 - - -3.86 -3.43 -4.13 -3.31 - -2.32 -3.99 -3.4 - -3.32 -3.42 -3.7 -2.86 -3.64
-0.67 -2.27 -3.42 -5.62 -0.88 0.11 1.1 2.16 2.01 2.0 2.17 2.06 0.56 -0.02 -0.58 -1.26 -0.19 -0.47 -2.05 1.07 0.98 1.73 0.31 -1.41 -4.2 -0.93 -0.28 -0.64 -3.05 0.02 -1.99 -0.08 -1.95 -4.6 -1.69 -1.49 -1.84 -2.3 -1.87 0.55 -3.44 -1.09 -1.24 -3.22 -2.79 -3.14 -1.67 -2.12 -0.79 -1.25 -1.03 -0.25 -0.0 -0.1
1.17 0.49 - 1.27 -7.47 -0.26 0.65 -2.27 -0.33 -1.38 -2.61 -1.13 -1.82 2.32 -0.43 -1.81 -0.94 -1.16 0.86 -2.69 -3.83 1.67 -0.21 0.31 -2.31 -0.45 -0.83 0.44 0.82 0.25 -2.2 -0.76 0.76 1.13 0.52 -2.68 0.15 -0.02 0.0 0.01 -0.96 -0.11 0.44 -1.17 1.02 -2.3 0.35 0.94 -0.48 -0.49 -1.0 -0.54 -0.38 -0.54
2.34 -0.22 - 4.6 -2.35 0.65 3.61 - - - - - - -0.5 - - - -1.26 - - - 2.98 - - - - - - - - - - -3.2 - -2.2 - - - -3.42 - - -2.38 -2.53 - - - - - - - - - - -
-5.02 -4.41 - -0.3 -2.62 1.3 3.22 -2.62 -4.83 -0.18 -0.13 - -0.04 2.47 -3.45 -2.39 -1.82 -2.79 0.98 -1.7 -2.69 0.9 1.58 1.2 -2.41 -1.11 0.88 0.03 -0.92 -0.33 0.03 1.44 0.64 -2.61 0.91 -2.02 -1.9 -1.87 -2.26 -1.06 -2.92 -1.0 -1.06 -5.0 -2.34 -4.42 -1.43 -1.39 1.36 0.13 -0.77 -0.3 -0.17 -0.7
-0.82 -0.83 -1.66 3.51 -2.56 0.27 2.07 -2.12 0.81 -2.21 -2.33 0.32 1.37 -0.49 -2.53 -3.2 -1.24 0.59 1.37 -0.27 -0.81 -3.59 -1.2 0.08 1.23 0.06 -1.35 -0.65 -1.9 -2.76 1.16 -0.75 -1.12 -0.11 -0.5 -0.1 -1.57 -1.0 -0.44 -1.11 -0.18 -1.23 -1.35 0.97 0.17 0.0 -3.75 -2.28 -1.83 -1.29 -1.02 -2.1 -1.5 -1.59
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.