Heatmap: Cluster_98 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Archegoniophore (female)
Antheridiophore (male)
Antheridium (male)
Sperm
Sporeling
Thallus
Thallus (vegetative)
Thallus (MpPAP1OX-1)
Thallus (Tak1-2)
Thallus (MpPAP1OX-3)
Thallus (MpPAP1OX-2)
Thallus (Tak1-3)
mid rib (male)
Gametophyte
Gemmaling (female, hpt2040)
Gemmaling (male, hpt2040)
Gemmaling (BC3-38)
Gemmaling (Tak1)
Gemmaling
Gemma cup
gemma cup (male)
Aseptically grown rhizoids, thalloid, gemmae
Control
Cold (3°C)
Dark (3 days)
Heat (33°C)
Light (435 uEm-2s-1)
Osmotic (100 mM mannitol)
Nitrogen deficiency (0 mM KNO3)
Salt (40 mM NaCl)
Cold-Dark
Cold-Light
Cold-Mannitol
Cold-Nitrogen deficiency
Cold-Salt
Heat-Dark
Heat-Mannitol
Heat-Nitrogen deficiency
Heat-Salt
Light-Salt
Mannitol-Dark
Mannitol-Light
Mannitol-Nitrogen deficiency
Nitrogen deficiency-Dark
Nitrogen deficiency-Light
Salt-Dark
Salt-Mannitol
Salt-Nitrogen deficiency
ZT2 (2 hours after light)
ZT6 (6 hours after light)
ZT10 (10 hours after light)
ZT14 (2 hours after dark)
ZT18 (6 hours after dark)
ZT22 (10 hours after dark)
-1.62 - 4.72 1.65 -0.95 -2.94 - - - - - - - -1.35 - - - 0.51 - - - - -0.18 - 1.52 - - -0.45 -0.76 0.14 -1.29 -0.51 -1.4 - -1.43 - - - - 0.0 -0.44 -0.02 - 0.2 1.32 - 0.38 0.81 -1.57 0.74 - 0.77 - -1.08
- 2.79 4.83 2.84 - -1.94 - 1.81 - - - - - -0.87 - - - - - - - - - - 0.32 - - -0.21 - - - 1.85 - - - -0.32 - - - - - - -0.64 - - - - - - - - - - -
- - 4.19 4.42 - -1.53 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.65 - - - 1.37 1.46 2.45 - - - - - - - - - - - - - - -
- 2.23 3.79 2.66 0.12 -0.94 -1.11 - - - - - - -2.4 - - -0.34 0.55 - - - 0.31 0.88 - - 1.04 -1.28 -0.24 - - - -2.03 -0.4 -1.74 -0.35 -1.86 0.44 1.47 1.03 -1.95 -1.94 -2.03 -1.15 -1.91 1.22 -0.35 - -1.93 - - -0.77 0.73 0.39 0.44
0.24 - 5.14 0.21 -0.66 - - - - - - - - 0.51 - - - - - - - - - 0.51 - - - 0.38 - 0.33 - - - - - - - - 2.15 1.31 - 0.18 0.1 - - - 0.19 - - - - - - -
-0.57 -0.0 3.91 2.09 -0.24 -0.75 -1.29 -1.68 -0.98 -1.64 -1.11 -1.77 -1.36 -1.31 -2.57 -1.34 -3.31 -1.38 -1.42 -0.56 -0.31 -1.24 -1.69 -2.89 -2.73 1.79 0.02 -1.42 -0.76 -1.5 -3.54 -0.41 -0.75 -2.06 -1.04 0.95 0.86 1.99 1.23 -0.9 -0.66 -0.36 -1.23 -1.54 -0.37 -1.77 -1.7 -1.86 -1.85 -1.72 -1.11 -0.83 -1.84 -1.91
- - 3.62 5.08 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.38 - 1.49 - - - 1.3 - - - - - - - - - - - - - - - -
- 0.55 4.65 2.99 0.48 - - 1.06 - - - - - - - - - - - - - 1.09 -2.41 -0.83 - - - - - -1.26 -0.35 1.07 - - -1.49 -0.4 -0.66 2.1 -0.66 - - 0.01 - -1.36 -0.49 -1.51 -1.66 - - -1.27 - - - -
-2.76 2.72 4.98 3.87 - -1.61 - - - - - - - -1.12 - - - - - - - - - - - - - - - - - - - - - - - -3.67 - - - - - -2.2 - - - - - - - -3.46 - -
- - 3.63 1.76 - - - - - - 1.72 - 0.24 - - - - - - 1.1 - - 0.91 0.52 -1.52 1.3 0.85 0.35 -0.71 0.26 0.04 -0.23 -1.3 -0.27 -2.92 0.47 -0.95 1.07 -0.34 0.76 -1.06 -0.28 -0.9 -1.34 1.49 - -0.45 -0.6 0.89 -0.17 -1.23 -1.35 -0.82 -1.77
1.63 - 4.77 3.73 - - -0.37 - - - - - - - - - - - - - - - - 1.12 - - - - - - - - 1.65 - - - - 1.4 - - - - - - - - - - - 0.58 - - - -
- - 5.23 1.46 - - - - - - - - - - - - - - - - - - - - - - - - -0.11 - - - - - - - - 3.46 - - - - - - - - - - - -0.09 -0.3 - - -
-2.06 2.45 4.35 3.35 -0.24 -3.52 -2.79 0.72 - - - - -0.35 0.0 - - - - - - - - -2.5 - - -0.32 - - - - - 1.51 - 0.72 -1.7 -0.14 -0.37 0.71 0.88 - -1.84 -0.3 - - -0.16 - -1.88 - - - - - - -
- - 4.46 4.6 - - - - - - - - - - - - - - - - - - - - - 2.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-0.02 -0.1 4.52 3.15 -0.87 -0.64 1.08 - - 0.45 - - - -2.09 - 0.16 -0.04 - - - - - -1.78 - -0.33 -0.55 - 0.49 - - 0.16 0.04 0.45 0.54 -0.28 -0.24 - -1.03 -1.08 - -1.9 - -1.11 - - - - -0.44 -0.85 -2.01 -1.81 - - -
-0.24 1.43 5.49 -0.63 -3.69 -2.27 -1.97 -1.37 -1.93 -1.77 - -1.4 -3.13 -4.32 - -4.67 -1.86 -4.49 -2.28 -1.26 -1.11 -1.55 -4.28 - - -2.65 -3.6 - -3.14 -4.61 -5.59 -4.27 -4.6 -6.43 -4.21 -6.45 -25.02 - -5.97 - -4.93 -5.92 -4.04 -4.52 -5.74 - - -4.23 -5.38 -6.68 -6.54 -4.1 - -21.24
-1.63 2.07 5.22 2.18 -1.66 -3.9 -3.22 - - - - - -0.9 - - - - - - - - - - - - -0.14 -1.46 -2.1 -1.61 - - -2.33 -1.22 - - -0.21 - -1.28 -2.28 -2.25 -2.27 -0.78 -2.52 -2.11 -2.22 -2.08 - - - -0.24 - - - -
0.37 0.78 3.98 3.33 -2.07 -1.35 -2.05 0.78 - 1.11 0.03 0.66 -1.45 -2.94 -0.92 - - - 0.28 -0.66 - - -0.85 -2.37 0.25 - -2.24 -0.48 -1.37 -1.61 -2.77 0.3 - -2.71 -0.51 -2.75 - -1.93 - -0.04 -1.85 - -2.08 0.74 -2.87 -1.26 -0.98 -2.96 -1.11 -0.35 -2.81 -0.2 1.12 -
- 2.83 4.38 3.84 - - - - - - - - - - - - - - - - - - - - - 2.08 - - 1.6 - - - - - - - - 1.03 - - - - - 1.25 - - - - - - - - - -
1.89 - 3.51 4.73 0.91 -1.12 - - - - - - - - - - - - - - - - - - - - - - - - - 0.74 - 2.41 - - 0.55 - - - - - - - - - 0.63 - - - - - - -
1.87 - 4.48 4.81 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
1.26 - 4.82 3.78 0.03 -0.11 - 1.91 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.96 - - - - - -0.59 -0.71 - - -0.72 - - - - - -
-0.1 0.51 4.58 3.09 -0.59 -0.75 - - - - - - - - - - 0.57 - - - - - - - - - 0.83 - - - - 0.87 0.91 - - - -1.22 0.35 -1.28 - 1.47 0.4 - -0.04 0.45 1.01 -1.16 - - - - - - -
- 3.11 4.71 3.71 - - - - - - - - - - - - - - - - - - - - - - - - - - - 2.61 - - - - - - - - - - - - - - - - - - - - - -
-1.6 -0.51 4.16 2.78 -0.83 -1.48 -1.76 - 0.5 -0.39 0.69 - 1.22 -0.83 -2.13 - -2.94 -2.08 - -1.29 -1.67 -1.44 -3.03 -1.33 -1.34 0.75 -0.15 - -1.45 -4.89 -1.6 1.5 -1.51 -1.23 -1.73 0.35 0.22 1.53 0.11 -0.95 -0.99 -1.04 -2.8 -1.54 -0.23 -1.94 -2.44 -1.53 - -2.64 -4.09 -3.3 -2.41 -
0.96 1.8 3.85 2.32 -3.55 -0.76 -1.44 -0.94 -1.59 -0.73 -2.28 - -2.07 0.46 -1.57 -1.26 -2.18 -1.66 - -2.91 0.23 -0.21 -1.38 -0.41 0.07 0.2 -2.37 -1.43 -1.78 -1.63 0.91 0.49 -0.73 -1.16 -0.1 -1.85 -0.54 1.05 -0.13 -2.92 0.04 -1.08 -1.49 0.71 -0.83 0.28 -0.97 -2.79 -2.13 -4.04 -2.99 -0.62 -3.01 -1.25
- - 4.75 2.96 -0.78 -2.77 - - - - - - - -2.03 - - - - - - - - -1.24 - - - -1.22 -0.1 -1.37 - - 2.71 - 0.63 - - - 2.41 - - -0.82 -1.97 - -1.77 -1.88 - - -0.38 -0.79 - - - - -
- - 4.59 4.91 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
0.5 1.1 4.65 2.92 0.77 -0.76 -1.34 - - - -0.02 - - -1.98 - -1.06 - - - - - - -1.52 -0.74 -2.12 - -1.11 -1.03 -0.54 -0.22 -0.33 0.22 -0.69 -1.05 -1.11 - -1.31 0.45 -1.22 -0.42 - - - -1.62 1.06 - - - - -1.12 - -1.31 - -
1.24 0.61 4.44 3.47 - -1.06 -2.19 - - - - - - -1.39 - - - - - - - 1.32 - -0.33 -0.54 - - - 1.33 -0.79 - - - - 0.62 - 0.45 1.97 - -0.99 - - -1.28 - -0.04 - -1.03 - - - - - - -
- - 5.35 2.74 1.61 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.27 -0.07 - - - - - - - - - - - - - - - - -
-0.66 2.08 3.76 2.84 -1.86 -0.29 -0.34 -1.62 1.54 - -1.56 - -0.81 -0.52 -2.27 -0.62 0.88 0.98 -1.24 1.82 2.29 -1.66 -0.91 -0.81 - -2.93 - -2.95 -1.71 - -2.44 -0.33 -2.4 -2.85 -0.93 - -1.71 -2.96 -1.59 -2.44 -4.06 - - -2.25 -3.47 - -1.82 -1.15 -3.21 -2.02 -1.58 0.32 -2.82 -2.22
0.85 2.32 4.08 4.13 -1.95 -1.25 -3.32 - - - - - - - - - - - - -0.48 - 1.48 -2.14 -1.51 - -3.02 -1.24 -0.15 -1.35 - - 1.0 - -1.72 -2.69 -2.71 -3.04 0.36 -0.98 - - -1.9 -2.03 - -2.83 - - -0.89 -2.5 -2.77 - - - -
- - 3.47 5.39 -0.19 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-1.36 2.5 5.04 2.73 -1.31 -3.98 -3.93 - - - - - - -3.24 - - - - -1.03 - - - -3.52 - - -2.0 -1.52 -4.24 -1.46 - -4.12 0.04 - -1.26 -4.07 -1.53 -2.82 1.3 -3.37 -2.58 -4.15 - -4.42 - -0.48 - -4.27 -3.24 - - - -1.36 - -
- - 4.34 4.18 - - - - - - - - - - - - - - - - - - - - - - 2.86 - 1.71 - - - - 2.32 - - - - - - - - - - - - - - - - - - - -
- 1.76 4.53 3.03 - - -0.92 - - - - - - - - - - - - - 4.07 - - - - - - - - - - 0.97 - - - - - - - - - - - - - - - - - - - - - -
-0.61 1.71 4.95 3.23 -1.57 -3.64 - - - - - - - -0.46 - - - - - - - - 0.48 - - - - 0.7 - -0.29 - - - - - - - 0.68 0.55 - - - -0.48 - - - - - - - - - - 0.1
1.11 1.68 5.47 2.11 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-1.24 2.99 4.8 2.37 -2.39 - - - - 1.43 1.28 - - - - - - - - - - - - - - - - - - - - - - -0.59 - - - 2.62 -0.85 - - - - - - - - - - - - - - -
- - 4.48 3.62 - - - - - - - - - - - - - - - - - - - - - 0.6 - - - - - - - - - 1.69 - 0.57 0.52 1.64 - - - - 0.73 - - - - - - 2.37 - 0.88
- 0.02 4.97 3.84 0.04 -3.89 - - - - - - - - - - - - - - - - - - - -0.36 - - - - - - - - -1.74 - -2.04 -0.42 0.61 - - 0.08 - - - - -1.9 - -1.78 -1.8 -1.72 - - -1.56
- 0.43 5.56 0.63 -0.99 -3.62 - - - - - - - - - - - - - - - - -3.63 - - -1.92 - - -2.47 - - -2.75 -2.65 - -2.68 -1.06 -0.98 -0.6 -2.9 - - - - -2.65 - -1.59 - -2.83 - - - - - -
- - 4.61 4.21 - - -0.33 3.15 - - - - - 0.47 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
0.87 - 4.86 3.84 - - - - - - - - - -0.07 - - - - - - - - - - - - - - - - - 2.77 - - - - - 0.02 - - - - - - - - - - - - - - - -
0.5 3.23 5.11 2.19 -4.5 -2.82 - - - - - - -2.07 -3.45 - - - - - -1.18 - - - - - - - - - - -3.11 -0.3 -3.17 -2.12 -3.26 - -1.08 -2.33 -3.41 -3.23 - - -3.49 - - - -1.73 - - -1.64 - -2.99 -3.11 -
1.56 - 4.63 3.09 0.95 -0.23 0.57 - - - - - - 0.08 - - - - - - - - - - 0.84 - - - 0.38 - - - - - - - -0.13 - -0.03 1.12 2.11 - - - - - - -0.02 - - - - - -
-0.69 2.62 4.31 1.23 - -2.1 -2.72 - - - - - -1.54 - -0.78 - - - - - - -0.32 -0.57 - -0.98 -0.4 - 0.61 - 0.16 - -1.61 -1.0 - -1.51 - 0.41 1.91 -0.14 -0.24 0.86 -0.07 -0.4 -0.96 - -0.14 0.64 -0.01 -2.57 - - -2.27 -0.8 0.91
- - 5.09 2.86 - -1.03 0.13 - - - - - - -0.71 - - - - - - - - -0.71 -0.25 - - - -0.83 0.05 0.78 - -1.75 -0.63 - - - - -1.81 - - - - -0.4 - - - -1.87 -1.86 - -0.04 -0.18 -1.59 - 0.16
- - 4.73 2.06 - - - - - - - - - - - - - - - - - - 1.01 - - - - - - 0.33 - 2.18 - 2.99 1.26 0.37 - 1.96 - - - - - - - - - - - - - - - -
-0.58 3.11 4.66 1.59 -3.14 -3.83 -2.64 0.75 - - - - - - - - 0.24 - - - - - - - -1.11 -1.76 - - 0.89 - -1.47 1.71 -1.52 0.23 - -0.46 0.28 0.26 - - -0.61 -0.71 -1.85 -1.62 - - - -1.6 - - - - - -
- 1.96 5.41 0.88 - - - - - - - - - - - - - - - - - - - - - - - - 1.24 - -1.22 - - -0.36 - -1.42 - 0.06 - - - - -1.56 - -1.24 - - - - - - - - -
- 1.42 5.32 2.69 - - - - - - - - - - - - - - - - - - - -0.07 - - - - -0.08 - - - - -0.16 - - - - - - - - - - - - - - - - - 1.03 - -
-1.76 0.51 4.61 3.84 -2.77 -2.81 -0.49 - - - - - - - - - - - - 2.4 - - -2.2 - - 0.07 - -1.16 -1.06 - - - - - -1.22 - 0.85 - -1.46 0.68 - - - - - - - - - - -0.19 - - -
-0.89 1.08 4.9 0.32 - - -3.41 - - - - 0.98 - - - - - - - - - - - 1.29 - - - - -0.67 - 0.45 2.98 -0.67 0.71 -0.67 - -1.45 -0.26 -1.32 - -0.32 -2.34 - - - - - -1.25 - - - - - -
0.15 2.42 4.01 3.43 - - - 3.02 - - - - - - - - - - - 2.64 - - - - - - - - - - - 2.17 - 0.83 - - - - - - - - - - - - - - - - - - - -
-0.93 1.11 5.03 4.14 -3.66 - - - - - - - - - - - - - - - - - - - - -2.66 - - -2.42 - - - - - - - -2.86 - - - - - - - -1.56 - - - - - - - - -
- - 5.14 4.23 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - 5.47 3.28 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-4.53 -0.43 5.08 3.41 - -3.23 - - - - - - - - - - - - - - - - -3.24 - -2.89 -0.34 -2.7 -2.28 -0.69 -3.18 -0.48 -3.44 -1.77 -1.69 -1.32 - -2.0 0.23 -1.51 -1.83 - -1.91 -1.07 -3.3 -0.4 - -1.93 -1.93 - -1.25 - - - -3.02
- 1.56 5.3 1.64 -2.07 - -3.11 - - - - - - - - - - - - - - - -2.06 - - - - - - -1.08 -2.03 -2.25 -2.28 -0.53 - - -2.46 1.72 -0.79 -0.31 - - -2.51 - -2.26 - - -2.28 -2.03 -1.4 - - - -
2.08 - 4.76 3.44 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2.71 1.41 0.29 0.41 - - - - - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.