Sequence Description Alias PCC hrr AT3G54050 high cyclic electron flow 1 0.9210921650646692 7 AT4G03280 photosynthetic electron transfer C 0.9182694231682612 3 AT5G66190 ferredoxin-NADP(+)-oxidoreductase 1 0.9178209276534217 6 AT5G43750 NAD(P)H dehydrogenase 18 0.9171085213541633 4 AT1G71500 Rieske (2Fe-2S) domain-containing protein 0.9115710855804195 5 AT1G42970 glyceraldehyde-3-phosphate dehydrogenase B subunit 0.9080609783292745 12 AT2G39470 PsbP-like protein 2 0.9074674416143492 10 AT5G07020 proline-rich family protein 0.9073819204472577 8 AT3G63140 chloroplast stem-loop binding protein of 41 kDa 0.9071328170942645 10 AT1G09340 chloroplast RNA binding 0.9057405550911543 13 AT1G74730 Protein of unknown function (DUF1118) 0.8985964364768982 11 AT3G10060 FKBP-like peptidyl-prolyl cis-trans isomerase family protein 0.8977206133467448 12 AT3G02730 thioredoxin F-type 1 0.8960472092264045 13 AT2G34860 DnaJ/Hsp40 cysteine-rich domain superfamily protein 0.8949713984637637 14 AT2G43560 FKBP-like peptidyl-prolyl cis-trans isomerase family protein 0.8948250756880383 15 AT3G55800 sedoheptulose-bisphosphatase 0.8922029649015945 19 AT1G12900 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 0.8845661753274382 19 AT2G46820 photosystem I P subunit 0.8826098747951621 18 AT4G21280 photosystem II subunit QA 0.8823811633749141 19 AT5G36790 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 0.8811643270468602 21 AT5G36700 2-phosphoglycolate phosphatase 1 0.8811643270468602 21 AT1G20340 Cupredoxin superfamily protein 0.8793117202444554 22 AT1G65230 Uncharacterized conserved protein (DUF2358) 0.8789932396638854 23 AT1G50320 thioredoxin X 0.8789207088153991 24 AT3G46780 plastid transcriptionally active 16 0.8784432857522169 25 AT5G09660 peroxisomal NAD-malate dehydrogenase 2 0.8774585174205658 26 AT5G27290 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54680.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 0.8770178227047984 27 AT1G44575 Chlorophyll A-B binding family protein 0.8764492107650689 28 AT4G02530 chloroplast thylakoid lumen protein 0.8753171876385692 29 AT5G35630 glutamine synthetase 2 0.8747478248704483 30 AT5G51110 Transcriptional coactivator/pterin dehydratase 0.874435281201752 31 AT5G16710 dehydroascorbate reductase 1 0.8738943908032297 32 AT5G58260 oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor 0.8726513856313869 33 AT1G67700 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 0.8715298440922608 34 AT1G51110 Plastid-lipid associated protein PAP / fibrillin family protein 0.8679848226491622 35 AT3G62030 rotamase CYP 4 0.8675175725589133 36 AT1G44920 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3054 (InterPro:IPR021414); Has 246 Blast hits to 246 proteins in 119 species: Archae - 14; Bacteria - 181; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 0.865180470052525 37 AT2G01110 Sec-independent periplasmic protein translocase 0.8642141896353698 38 AT1G11860 Glycine cleavage T-protein family 0.8640677816650998 39 AT2G20890 photosystem II reaction center PSB29 protein 0.863539985443951 40 AT1G76450 Photosystem II reaction center PsbP family protein 0.8628835508344379 41 AT3G12780 phosphoglycerate kinase 1 0.862222534965209 42 AT1G54780 thylakoid lumen 18.3 kDa protein 0.8617279535055553 43 AT2G30170 Protein phosphatase 2C family protein 0.8613141192867071 44 AT1G15980 NDH-dependent cyclic electron flow 1 0.8605498708338001 45 AT2G21960 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56180.1); Has 224 Blast hits to 222 proteins in 59 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). 0.8587802648705355 46 AT4G37930 serine transhydroxymethyltransferase 1 0.8586770436007681 47 AT1G56500 haloacid dehalogenase-like hydrolase family protein 0.857914605873965 48 AT4G32260 ATPase, F0 complex, subunit B/B', bacterial/chloroplast 0.857851754558037 49 AT2G21280 NAD(P)-binding Rossmann-fold superfamily protein 0.8576966434725963 50 AT3G55330 PsbP-like protein 1 0.8565882681049724 51 AT4G22890 PGR5-LIKE A 0.8543208161760307 52 AT4G09650 ATP synthase delta-subunit gene 0.8528748496092647 53 AT1G77090 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 0.85272907978428 54 AT3G26650 glyceraldehyde 3-phosphate dehydrogenase A subunit 0.8524053780490729 55 AT5G19220 ADP glucose pyrophosphorylase large subunit 1 0.8512598939536973 56 AT1G55480 protein containing PDZ domain, a K-box domain, and a TPR region 0.8509868758445396 57 AT1G06680 photosystem II subunit P-1 0.8508653348959733 58 AT5G06290 2-cysteine peroxiredoxin B 0.8505368042638168 59 AT1G26220 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.8504150406324236 60 AT1G32080 membrane protein, putative 0.8502486101156213 61 AT1G19150 photosystem I light harvesting complex gene 6 0.8496033335753553 62 AT3G61870 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 200 Blast hits to 200 proteins in 73 species: Archae - 0; Bacteria - 112; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). 0.848624909739496 63 AT1G20810 FKBP-like peptidyl-prolyl cis-trans isomerase family protein 0.8485962289511682 64 AT4G39710 FK506-binding protein 16-2 0.8475780197090037 65 AT3G15360 thioredoxin M-type 4 0.8467884003791865 66 AT1G73060 Low PSII Accumulation 3 0.8467683602531204 67 AT1G03680 thioredoxin M-type 1 0.8462595584969845 68 AT2G04039 unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2996 (InterPro:IPR021374); Has 159 Blast hits to 159 proteins in 52 species: Archae - 0; Bacteria - 76; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). 0.8455229807920969 69 AT3G48420 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 0.844898115841546 70 AT3G12345 unknown protein; LOCATED IN: chloroplast; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 0.8448264314781099 71 AT5G03880 Thioredoxin family protein 0.8444423657598557 72 AT1G67090 ribulose bisphosphate carboxylase small chain 1A 0.8440672295620787 73 AT5G20140 SOUL heme-binding family protein 0.842081490685753 74 AT1G31190 myo-inositol monophosphatase like 1 0.8418683630268007 75 AT4G09010 ascorbate peroxidase 4 0.8408663445184498 76 AT3G11630 Thioredoxin superfamily protein 0.8400087984988924 77 AT4G22830 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2499 (InterPro:IPR019634); Has 319 Blast hits to 317 proteins in 103 species: Archae - 0; Bacteria - 147; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink). 0.8379267386517939 78 AT1G34000 one-helix protein 2 0.8373708552765796 79 AT1G32060 phosphoribulokinase 0.8362956695940108 80 AT5G21430 Chaperone DnaJ-domain superfamily protein 0.8351376299709854 81 AT5G45680 FK506-binding protein 13 0.8350112082832089 82 AT1G32470 Single hybrid motif superfamily protein 0.8349762618316149 83 AT4G35250 NAD(P)-binding Rossmann-fold superfamily protein 0.8345614536125501 84 AT1G54500 Rubredoxin-like superfamily protein 0.8344147329245881 85 AT4G01150 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 0.8343948690977301 86 AT4G04640 ATPase, F1 complex, gamma subunit protein 0.8340536024045111 87 AT1G18060 unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 74 Blast hits to 74 proteins in 29 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 0.8338451139190239 88 AT3G26710 cofactor assembly of complex C 0.8336415189141922 89 AT1G43560 thioredoxin Y2 0.8333187941975919 90 AT5G38410 Ribulose bisphosphate carboxylase (small chain) family protein 0.8317189503548603 91 AT3G04790 Ribose 5-phosphate isomerase, type A protein 0.8314000224443696 92 AT1G52510 alpha/beta-Hydrolases superfamily protein 0.8304002786970425 93 AT1G16880 uridylyltransferase-related 0.830284775585063 94 AT4G34190 stress enhanced protein 1 0.8289057238594987 95 AT5G38520 alpha/beta-Hydrolases superfamily protein 0.8283488278269282 96 AT3G56010 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 25 Blast hits to 25 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 0.8277078390971406 97 AT2G35370 glycine decarboxylase complex H 0.827284382269945 98 AT1G70760 inorganic carbon transport protein-related 0.8271731478850456 99 AT3G51510 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 0.8260625296985962 100