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  5. AT5G64140

AT5G64140


Description : ribosomal protein S28


Gene families : OG_01_0001614 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001614_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G64140
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
Cre12.g510450 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g15160.1 No alias component RPS28 of SSU proteome 0.13 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_19610V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.1 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c17_13300V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.12 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_6000V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.13 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
MF GO:0003735 structural constituent of ribosome IBA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005840 ribosome ISS Interproscan
BP GO:0006407 rRNA export from nucleus IBA Interproscan
BP GO:0006412 translation ISS Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
CC GO:0022627 cytosolic small ribosomal subunit IDA Interproscan
BP GO:0042254 ribosome biogenesis ISS Interproscan
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Type GO Term Name Evidence Source
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
CC GO:0000418 RNA polymerase IV complex IEP HCCA
CC GO:0000419 RNA polymerase V complex IEP HCCA
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
BP GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
BP AT4G27670 expression graph

Co-expression neighborhood: AT4G27670 (HRR)