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  5. Zci_03129.1

Zci_03129.1


Description : RING-HC-class E3 ligase


Gene families : OG_01_0002606 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002606_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zci_03129.1
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AT5G01520 No alias RING/U-box superfamily protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp6g12970.1 No alias RING-HC-class E3 ligase 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_21640V3.1 No alias RING/U-box superfamily protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_24440V3.1 No alias RING/U-box superfamily protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004451 isocitrate lyase activity IEP HCCA
MF GO:0004474 malate synthase activity IEP HCCA
BP GO:0006081 cellular aldehyde metabolic process IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006097 glyoxylate cycle IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009581 detection of external stimulus IEP HCCA
BP GO:0009582 detection of abiotic stimulus IEP HCCA
BP GO:0009583 detection of light stimulus IEP HCCA
BP GO:0009584 detection of visible light IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016833 oxo-acid-lyase activity IEP HCCA
BP GO:0018298 protein-chromophore linkage IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046487 glyoxylate metabolic process IEP HCCA
MF GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer IEP HCCA
BP GO:0051606 detection of stimulus IEP HCCA

No InterPro domains available for this sequence

No external refs found!