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  5. Zci_03204.1

Zci_03204.1


Description : Nonsense-Mediated mRNA Decay protein (SMG7)


Gene families : OG_01_0003497 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0003497_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zci_03204.1
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AT5G19400 No alias Telomerase activating protein Est1 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre16.g648750 No alias Protein SMG7 OS=Arabidopsis thaliana 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp8g12080.1 No alias SMG7 Nonsense-Mediated mRNA Decay protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_18290V3.1 No alias Telomerase activating protein Est1 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c7_5420V3.1 No alias Telomerase activating protein Est1 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
CC GO:0000439 transcription factor TFIIH core complex IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004529 exodeoxyribonuclease activity IEP HCCA
MF GO:0004536 deoxyribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005666 RNA polymerase III complex IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP HCCA
BP GO:0006383 transcription by RNA polymerase III IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008297 single-stranded DNA exodeoxyribonuclease activity IEP HCCA
MF GO:0008409 5'-3' exonuclease activity IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016895 exodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0030488 tRNA methylation IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032784 regulation of DNA-templated transcription, elongation IEP HCCA
BP GO:0032786 positive regulation of DNA-templated transcription, elongation IEP HCCA
BP GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter IEP HCCA
BP GO:0034243 regulation of transcription elongation from RNA polymerase II promoter IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0034511 U3 snoRNA binding IEP HCCA
CC GO:0034708 methyltransferase complex IEP HCCA
MF GO:0035312 5'-3' exodeoxyribonuclease activity IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
CC GO:0043527 tRNA methyltransferase complex IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0045145 single-stranded DNA 5'-3' exodeoxyribonuclease activity IEP HCCA
BP GO:0045893 positive regulation of transcription, DNA-templated IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR019458 Est1_N 69 208
IPR018834 DNA/RNA-bd_Est1-type 222 570
No external refs found!