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  5. Zci_04304.1

Zci_04304.1


Description : component VIP5/RTF1 of PAF1C transcription initiation and elongation complex


Gene families : OG_01_0005147 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0005147_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zci_04304.1
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
Mp1g16830.1 No alias component VIP5/RTF1 of PAF1C transcription initiation... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006289 nucleotide-excision repair IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP HCCA
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
CC GO:0000775 chromosome, centromeric region IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004529 exodeoxyribonuclease activity IEP HCCA
MF GO:0004536 deoxyribonuclease activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005666 RNA polymerase III complex IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006383 transcription by RNA polymerase III IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008297 single-stranded DNA exodeoxyribonuclease activity IEP HCCA
MF GO:0008409 5'-3' exonuclease activity IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016895 exodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
MF GO:0035312 5'-3' exodeoxyribonuclease activity IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0045145 single-stranded DNA 5'-3' exodeoxyribonuclease activity IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0090522 vesicle tethering involved in exocytosis IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
BP GO:0099022 vesicle tethering IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR004600 TFIIH_Tfb4/GTF2H3 649 831
IPR004343 Plus-3_dom 279 383
No external refs found!