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  5. Zci_04788.1

Zci_04788.1


Description : component LHCb1/2/3 of LHC-II complex


Gene families : OG_01_0000051 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000051_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zci_04788.1
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AT1G29910 No alias chlorophyll A/B binding protein 3 0.13 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G29920 No alias chlorophyll A/B-binding protein 2 0.12 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G29930 No alias chlorophyll A/B binding protein 1 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G05070 No alias photosystem II light harvesting complex gene 2.2 0.12 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G34420 No alias photosystem II light harvesting complex gene B1B2 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G34430 No alias light-harvesting chlorophyll-protein complex II subunit B1 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G27690 No alias photosystem II light harvesting complex gene 2.3 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G54270 No alias light-harvesting chlorophyll B-binding protein 3 0.12 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre01.g066917 No alias Photosynthesis.photophosphorylation.photosystem... 0.12 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g29620.1 No alias component LHCb1/2/3 of LHC-II complex 0.11 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g05880.1 No alias component LHCb1/2/3 of LHC-II complex 0.17 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g05890.1 No alias component LHCb1/2/3 of LHC-II complex 0.15 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06710.1 No alias component LHCb1/2/3 of LHC-II complex 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06720.1 No alias component LHCb1/2/3 of LHC-II complex 0.16 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06730.1 No alias component LHCb1/2/3 of LHC-II complex 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06740.1 No alias component LHCb1/2/3 of LHC-II complex 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06750.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06760.1 No alias component LHCb1/2/3 of LHC-II complex 0.11 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06770.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06780.1 No alias component LHCb1/2/3 of LHC-II complex 0.13 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06790.1 No alias component LHCb1/2/3 of LHC-II complex 0.15 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g08940.1 No alias component LHCb1/2/3 of LHC-II complex 0.11 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g09180.1 No alias component LHCb1/2/3 of LHC-II complex 0.13 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_5930V3.1 No alias photosystem II light harvesting complex gene 2.1 0.13 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_7900V3.1 No alias photosystem II light harvesting complex gene 2.1 0.12 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c18_8100V3.1 No alias photosystem II light harvesting complex gene 2.1 0.1 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_20900V3.1 No alias light-harvesting chlorophyll B-binding protein 3 0.15 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c21_3950V3.1 No alias photosystem II light harvesting complex gene 2.1 0.14 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c22_5610V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c26_6740V3.1 No alias photosystem II light harvesting complex gene 2.1 0.14 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_35930V3.1 No alias photosystem II light harvesting complex gene 2.1 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_36190V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_36380V3.1 No alias photosystem II light harvesting complex gene 2.1 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_36500V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_36570V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_4100V3.1 No alias photosystem II light harvesting complex gene 2.1 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_7150V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_12510V3.1 No alias photosystem II light harvesting complex gene 2.1 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3s116_10V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004325 ferrochelatase activity IEP HCCA
MF GO:0004512 inositol-3-phosphate synthase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006020 inositol metabolic process IEP HCCA
BP GO:0006021 inositol biosynthetic process IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0007160 cell-matrix adhesion IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016851 magnesium chelatase activity IEP HCCA
MF GO:0016872 intramolecular lyase activity IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
BP GO:0031589 cell-substrate adhesion IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0046173 polyol biosynthetic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP HCCA
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 100 266
No external refs found!