Zci_04808.1

Description : subunit NRPB1 of RNA polymerase II complex

Gene families : OG_01_0005123 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0005123_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zci_04808.1
Cluster	HCCA: Cluster_179

Target	Alias	Description	ECC score	Gene Family Method	Actions
AT4G35800	No alias	RNA polymerase II large subunit	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_32300V3.1	No alias	RNA polymerase II large subunit	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006366	transcription by RNA polymerase II	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	HCCA
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0004673	protein histidine kinase activity	IEP	HCCA
MF	GO:0004674	protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
MF	GO:0010181	FMN binding	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140299	small molecule sensor activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007080	RNA_pol_Rpb1_1	3	89
IPR007081	RNA_pol_Rpb1_5	567	1167
IPR007075	RNA_pol_Rpb1_6	633	817
IPR007073	RNA_pol_Rpb1_7	911	1046
IPR007066	RNA_pol_Rpb1_3	263	429
IPR000722	RNA_pol_asu	91	259
IPR007083	RNA_pol_Rpb1_4	454	560
IPR000684	RNA_pol_II_repeat_euk	1524	1537
IPR000684	RNA_pol_II_repeat_euk	1321	1334
IPR000684	RNA_pol_II_repeat_euk	1370	1383
IPR000684	RNA_pol_II_repeat_euk	1496	1509
IPR000684	RNA_pol_II_repeat_euk	1384	1397
IPR000684	RNA_pol_II_repeat_euk	1307	1320
IPR000684	RNA_pol_II_repeat_euk	1292	1306
IPR000684	RNA_pol_II_repeat_euk	1447	1460
IPR000684	RNA_pol_II_repeat_euk	1377	1390
IPR000684	RNA_pol_II_repeat_euk	1475	1488
IPR000684	RNA_pol_II_repeat_euk	1489	1502
IPR000684	RNA_pol_II_repeat_euk	1335	1348
IPR000684	RNA_pol_II_repeat_euk	1405	1418
IPR000684	RNA_pol_II_repeat_euk	1510	1523
IPR000684	RNA_pol_II_repeat_euk	1517	1530
IPR000684	RNA_pol_II_repeat_euk	1419	1432
IPR000684	RNA_pol_II_repeat_euk	1328	1341
IPR000684	RNA_pol_II_repeat_euk	1300	1313
IPR000684	RNA_pol_II_repeat_euk	1461	1474
IPR000684	RNA_pol_II_repeat_euk	1391	1404
IPR000684	RNA_pol_II_repeat_euk	1433	1446
IPR000684	RNA_pol_II_repeat_euk	1356	1369
IPR000684	RNA_pol_II_repeat_euk	1482	1495
IPR000684	RNA_pol_II_repeat_euk	1363	1376
IPR000684	RNA_pol_II_repeat_euk	1531	1544

External Links

No external refs found!

Zci_04808.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation