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  5. Zci_04996.2

Zci_04996.2


Description : component BRCA2 of regulatory BRCC deubiquination complex


Gene families : OG_01_0005038 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0005038_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zci_04996.2
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AT4G00020 No alias BREAST CANCER 2 like 2A 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G01630 No alias BRCA2-like B 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp6g19670.1 No alias DMC1-recombinase recruitment protein (BRCA2). component... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004455 ketol-acid reductoisomerase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006520 cellular amino acid metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008569 minus-end-directed microtubule motor activity IEP HCCA
BP GO:0009081 branched-chain amino acid metabolic process IEP HCCA
BP GO:0009082 branched-chain amino acid biosynthetic process IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0017070 U6 snRNA binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
MF GO:0030623 U5 snRNA binding IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
MF GO:0070122 isopeptidase activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR015187 BRCA2_OB_1 1182 1318
IPR002093 BRCA2_repeat 824 850
IPR015252 BRCA2_hlx 1105 1178
No external refs found!