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  5. Zci_06441.1

Zci_06441.1


Description : component uS6c of small ribosomal subunit proteome


Gene families : OG_01_0005014 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0005014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zci_06441.1
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AT1G64510 No alias Translation elongation factor EF1B/ribosomal protein S6... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g520600 No alias Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g07210.1 No alias component psRPS6 of small ribosomal subunit proteome 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_17560V3.1 No alias Translation elongation factor EF1B/ribosomal protein S6... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP HCCA
CC GO:0000445 THO complex part of transcription export complex IEP HCCA
MF GO:0003855 3-dehydroquinate dehydratase activity IEP HCCA
MF GO:0004470 malic enzyme activity IEP HCCA
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006810 transport IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016615 malate dehydrogenase activity IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034613 cellular protein localization IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0070402 NADPH binding IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
InterPro domains Description Start Stop
IPR000529 Ribosomal_S6 99 196
No external refs found!