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  5. Zci_06876.1

Zci_06876.1


Description : histone (H2A)


Gene families : OG_01_0000053 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000053_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zci_06876.1
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AT1G08880 No alias Histone superfamily protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G51060 No alias histone H2A 10 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G54690 No alias gamma histone variant H2AX 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G20670 No alias histone H2A 13 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G27230 No alias histone H2A 2 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G27670 No alias histone H2A 7 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G59870 No alias histone H2A 6 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g264750 No alias Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g264950 No alias Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g265350 No alias Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g266700 No alias Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g268050 No alias Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g268300 No alias Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g271350 No alias Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g273900 No alias Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g274200 No alias Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g274800 No alias Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g275850 No alias Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g276500 No alias Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g276950 No alias Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g504500 No alias Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g504750 No alias Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g505550 No alias Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g506250 No alias Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre13.g570100 No alias Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre13.g590800 No alias Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre13.g591150 No alias Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g708550 No alias Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g709200 No alias Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g710400 No alias Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g711700 No alias Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g713400 No alias Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g714500 No alias Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp2g00760.1 No alias histone (H2A) 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g00840.1 No alias histone (H2A) 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_4790V3.1 No alias Histone superfamily protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_29410V3.1 No alias histone H2A 10 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003855 3-dehydroquinate dehydratase activity IEP HCCA
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 cellular amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044267 cellular protein metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0120227 acyl-CoA binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
MF GO:1901567 fatty acid derivative binding IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 89 121
IPR007125 Histone_H2A/H2B/H3 9 86
No external refs found!