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  5. AT2G39580

AT2G39580


Description : CONTAINS InterPro DOMAIN/s: Putative zinc-finger domain (InterPro:IPR019607); Has 249 Blast hits to 219 proteins in 85 species: Archae - 0; Bacteria - 144; Metazoa - 29; Fungi - 8; Plants - 50; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).


Gene families : OG_01_0005096 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0005096_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G39580
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
Pp3c6_12750V3.1 No alias No annotation 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
BP GO:0000278 mitotic cell cycle IEP HCCA
CC GO:0000775 chromosome, centromeric region IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0000976 transcription cis-regulatory region binding IEP HCCA
MF GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding IEP HCCA
MF GO:0000979 RNA polymerase II core promoter sequence-specific DNA binding IEP HCCA
MF GO:0001046 core promoter sequence-specific DNA binding IEP HCCA
MF GO:0001067 transcription regulatory region nucleic acid binding IEP HCCA
BP GO:0002832 negative regulation of response to biotic stimulus IEP HCCA
BP GO:0003002 regionalization IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004694 eukaryotic translation initiation factor 2alpha kinase activity IEP HCCA
MF GO:0004722 protein serine/threonine phosphatase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006379 mRNA cleavage IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006419 alanyl-tRNA aminoacylation IEP HCCA
BP GO:0006464 cellular protein modification process IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006505 GPI anchor metabolic process IEP HCCA
BP GO:0006506 GPI anchor biosynthetic process IEP HCCA
BP GO:0006521 regulation of cellular amino acid metabolic process IEP HCCA
BP GO:0006723 cuticle hydrocarbon biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006935 chemotaxis IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
BP GO:0007155 cell adhesion IEP HCCA
BP GO:0007389 pattern specification process IEP HCCA
BP GO:0007602 phototransduction IEP HCCA
MF GO:0008022 protein C-terminus binding IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008285 negative regulation of cell population proliferation IEP HCCA
MF GO:0008420 RNA polymerase II CTD heptapeptide repeat phosphatase activity IEP HCCA
BP GO:0009582 detection of abiotic stimulus IEP HCCA
BP GO:0009583 detection of light stimulus IEP HCCA
BP GO:0009585 red, far-red light phototransduction IEP HCCA
BP GO:0009593 detection of chemical stimulus IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009636 response to toxic substance IEP HCCA
BP GO:0009787 regulation of abscisic acid-activated signaling pathway IEP HCCA
BP GO:0009838 abscission IEP HCCA
BP GO:0009880 embryonic pattern specification IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009900 dehiscence IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009911 positive regulation of flower development IEP HCCA
BP GO:0009954 proximal/distal pattern formation IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010014 meristem initiation IEP HCCA
BP GO:0010019 chloroplast-nucleus signaling pathway IEP HCCA
BP GO:0010047 fruit dehiscence IEP HCCA
BP GO:0010072 primary shoot apical meristem specification IEP HCCA
BP GO:0010090 trichome morphogenesis IEP HCCA
BP GO:0010098 suspensor development IEP HCCA
BP GO:0010112 regulation of systemic acquired resistance IEP HCCA
BP GO:0010113 negative regulation of systemic acquired resistance IEP HCCA
BP GO:0010183 pollen tube guidance IEP HCCA
BP GO:0010227 floral organ abscission IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0010247 detection of phosphate ion IEP HCCA
BP GO:0010337 regulation of salicylic acid metabolic process IEP HCCA
CC GO:0010445 nuclear dicing body IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010565 regulation of cellular ketone metabolic process IEP HCCA
BP GO:0010599 production of lsiRNA involved in RNA interference IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0016925 protein sumoylation IEP HCCA
MF GO:0018024 histone-lysine N-methyltransferase activity IEP HCCA
BP GO:0018105 peptidyl-serine phosphorylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018209 peptidyl-serine modification IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019789 SUMO transferase activity IEP HCCA
MF GO:0019902 phosphatase binding IEP HCCA
MF GO:0019903 protein phosphatase binding IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0022610 biological adhesion IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0031053 primary miRNA processing IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0032102 negative regulation of response to external stimulus IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0033238 regulation of cellular amine metabolic process IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
CC GO:0034399 nuclear periphery IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0035279 mRNA cleavage involved in gene silencing by miRNA IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0040011 locomotion IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0042127 regulation of cell population proliferation IEP HCCA
BP GO:0042330 taxis IEP HCCA
BP GO:0042743 hydrogen peroxide metabolic process IEP HCCA
BP GO:0042753 positive regulation of circadian rhythm IEP HCCA
MF GO:0042800 histone methyltransferase activity (H3-K4 specific) IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044267 cellular protein metabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
BP GO:0045892 negative regulation of transcription, DNA-templated IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048481 plant ovule development IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048582 positive regulation of post-embryonic development IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0050826 response to freezing IEP HCCA
BP GO:0050918 positive chemotaxis IEP HCCA
BP GO:0051094 positive regulation of developmental process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051240 positive regulation of multicellular organismal process IEP HCCA
BP GO:0051253 negative regulation of RNA metabolic process IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051568 histone H3-K4 methylation IEP HCCA
BP GO:0051606 detection of stimulus IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0062012 regulation of small molecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
BP GO:0080050 regulation of seed development IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090352 regulation of nitrate assimilation IEP HCCA
BP GO:0090421 embryonic meristem initiation IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901419 regulation of response to alcohol IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1902679 negative regulation of RNA biosynthetic process IEP HCCA
BP GO:1903314 regulation of nitrogen cycle metabolic process IEP HCCA
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1905957 regulation of cellular response to alcohol IEP HCCA
MF GO:1990837 sequence-specific double-stranded DNA binding IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000034 regulation of seed maturation IEP HCCA
BP GO:2000070 regulation of response to water deprivation IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
BP GO:2000243 positive regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR019607 Putative_zinc-finger_domain 808 828
PLAZA 3.0 Dicots AT2G39580