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  5. Zci_07376.3

Zci_07376.3


Description : pathogen polygalacturonase inhibitor (PGIP)


Gene families : OG_01_0000116 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000116_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zci_07376.3
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
Zci_07307.1 No alias no annotation 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_07376.1 No alias pathogen polygalacturonase inhibitor (PGIP) 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_07376.2 No alias pathogen polygalacturonase inhibitor (PGIP) 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_07479.1 No alias no annotation 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_07479.3 No alias no annotation 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_07479.5 No alias no annotation 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_07751.4 No alias no annotation 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_07783.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004112 cyclic-nucleotide phosphodiesterase activity IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
BP GO:0015074 DNA integration IEP HCCA
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 165 225
IPR001611 Leu-rich_rpt 238 297
IPR013210 LRR_N_plant-typ 74 113
IPR001611 Leu-rich_rpt 142 164
No external refs found!