1. Home
  2. Species
  3. Zygnema circumcarinatum
  4. Sequence
  5. Zci_08822.1

Zci_08822.1


Description : component eL6 of LSU proteome component


Gene families : OG_01_0001696 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001696_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zci_08822.1
Cluster HCCA: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
AT1G18540 No alias Ribosomal protein L6 family protein 0.23 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G74050 No alias Ribosomal protein L6 family protein 0.2 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G74060 No alias Ribosomal protein L6 family protein 0.16 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre01.g011000 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g11670.1 No alias component RPL6 of LSU proteome component 0.19 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_4100V3.1 No alias Ribosomal protein L6 family protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_4160V3.1 No alias Ribosomal protein L6 family protein 0.11 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_24300V3.1 No alias Ribosomal protein L6 family protein 0.13 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_13300V3.1 No alias Ribosomal protein L6 family protein 0.12 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006914 autophagy IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
BP GO:0071985 multivesicular body sorting pathway IEP HCCA
InterPro domains Description Start Stop
IPR000915 60S_ribosomal_L6E 121 227
IPR005568 Ribosomal_L6_N 6 52
No external refs found!