AT2G41620


Description : Nucleoporin interacting component (Nup93/Nic96-like) family protein


Gene families : OG_01_0006852 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0006852_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G41620
Cluster HCCA: Cluster_258

Target Alias Description ECC score Gene Family Method Actions
Cre17.g717800 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp2g23730.1 No alias NUP93 scaffold nucleoporin of nuclear pore complex 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005635 nuclear envelope IDA Interproscan
CC GO:0005730 nucleolus IDA Interproscan
BP GO:0006310 DNA recombination RCA Interproscan
BP GO:0006406 mRNA export from nucleus RCA Interproscan
BP GO:0007062 sister chromatid cohesion RCA Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
BP GO:0009640 photomorphogenesis RCA Interproscan
BP GO:0009793 embryo development ending in seed dormancy RCA Interproscan
BP GO:0009845 seed germination RCA Interproscan
BP GO:0009909 regulation of flower development RCA Interproscan
BP GO:0009933 meristem structural organization RCA Interproscan
BP GO:0010074 maintenance of meristem identity RCA Interproscan
BP GO:0010162 seed dormancy process RCA Interproscan
BP GO:0010182 sugar mediated signaling pathway RCA Interproscan
BP GO:0010228 vegetative to reproductive phase transition of meristem RCA Interproscan
BP GO:0010332 response to gamma radiation RCA Interproscan
BP GO:0016567 protein ubiquitination RCA Interproscan
BP GO:0019915 lipid storage RCA Interproscan
BP GO:0031048 heterochromatin assembly by small RNA RCA Interproscan
BP GO:0032204 regulation of telomere maintenance RCA Interproscan
BP GO:0043247 telomere maintenance in response to DNA damage RCA Interproscan
BP GO:0045132 meiotic chromosome segregation RCA Interproscan
BP GO:0050826 response to freezing RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000018 regulation of DNA recombination IEP HCCA
BP GO:0000075 cell cycle checkpoint signaling IEP HCCA
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
BP GO:0000098 sulfur amino acid catabolic process IEP HCCA
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
MF GO:0000217 DNA secondary structure binding IEP HCCA
CC GO:0000228 nuclear chromosome IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0000400 four-way junction DNA binding IEP HCCA
BP GO:0000578 embryonic axis specification IEP HCCA
BP GO:0000710 meiotic mismatch repair IEP HCCA
CC GO:0000785 chromatin IEP HCCA
CC GO:0000791 euchromatin IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0001409 guanine nucleotide transmembrane transporter activity IEP HCCA
BP GO:0001736 establishment of planar polarity IEP HCCA
BP GO:0002376 immune system process IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0004722 protein serine/threonine phosphatase activity IEP HCCA
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005819 spindle IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005874 microtubule IEP HCCA
CC GO:0005876 spindle microtubule IEP HCCA
CC GO:0005938 cell cortex IEP HCCA
CC GO:0005963 magnesium-dependent protein serine/threonine phosphatase complex IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006290 pyrimidine dimer repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006360 transcription by RNA polymerase I IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006470 protein dephosphorylation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0007026 negative regulation of microtubule depolymerization IEP HCCA
BP GO:0007093 mitotic cell cycle checkpoint signaling IEP HCCA
BP GO:0007164 establishment of tissue polarity IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009093 cysteine catabolic process IEP HCCA
BP GO:0009411 response to UV IEP HCCA
CC GO:0009524 phragmoplast IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009648 photoperiodism IEP HCCA
BP GO:0009798 axis specification IEP HCCA
BP GO:0009825 multidimensional cell growth IEP HCCA
BP GO:0009880 embryonic pattern specification IEP HCCA
BP GO:0009910 negative regulation of flower development IEP HCCA
BP GO:0009942 longitudinal axis specification IEP HCCA
BP GO:0010017 red or far-red light signaling pathway IEP HCCA
BP GO:0010019 chloroplast-nucleus signaling pathway IEP HCCA
BP GO:0010048 vernalization response IEP HCCA
BP GO:0010072 primary shoot apical meristem specification IEP HCCA
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP HCCA
MF GO:0010292 GTP:GDP antiporter activity IEP HCCA
BP GO:0010311 lateral root formation IEP HCCA
BP GO:0010380 regulation of chlorophyll biosynthetic process IEP HCCA
BP GO:0010431 seed maturation IEP HCCA
BP GO:0010540 basipetal auxin transport IEP HCCA
BP GO:0010608 posttranscriptional regulation of gene expression IEP HCCA
BP GO:0010639 negative regulation of organelle organization IEP HCCA
BP GO:0010948 negative regulation of cell cycle process IEP HCCA
MF GO:0015215 nucleotide transmembrane transporter activity IEP HCCA
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP HCCA
MF GO:0015301 anion:anion antiporter activity IEP HCCA
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP HCCA
BP GO:0016049 cell growth IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
BP GO:0016441 posttranscriptional gene silencing IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016846 carbon-sulfur lyase activity IEP HCCA
BP GO:0017038 protein import IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0019448 L-cysteine catabolic process IEP HCCA
BP GO:0019450 L-cysteine catabolic process to pyruvate IEP HCCA
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030422 production of siRNA involved in RNA interference IEP HCCA
BP GO:0030865 cortical cytoskeleton organization IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0031047 gene silencing by RNA IEP HCCA
BP GO:0031050 dsRNA processing IEP HCCA
BP GO:0031110 regulation of microtubule polymerization or depolymerization IEP HCCA
BP GO:0031111 negative regulation of microtubule polymerization or depolymerization IEP HCCA
BP GO:0031114 regulation of microtubule depolymerization IEP HCCA
BP GO:0031122 cytoplasmic microtubule organization IEP HCCA
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP HCCA
CC GO:0031300 intrinsic component of organelle membrane IEP HCCA
CC GO:0031301 integral component of organelle membrane IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0031647 regulation of protein stability IEP HCCA
MF GO:0032135 DNA insertion or deletion binding IEP HCCA
MF GO:0032137 guanine/thymine mispair binding IEP HCCA
MF GO:0032138 single base insertion or deletion binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0032300 mismatch repair complex IEP HCCA
CC GO:0032301 MutSalpha complex IEP HCCA
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP HCCA
BP GO:0032886 regulation of microtubule-based process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0035064 methylated histone binding IEP HCCA
BP GO:0035194 post-transcriptional gene silencing by RNA IEP HCCA
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IEP HCCA
BP GO:0040007 growth IEP HCCA
BP GO:0040030 regulation of molecular function, epigenetic IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043242 negative regulation of protein-containing complex disassembly IEP HCCA
BP GO:0043244 regulation of protein-containing complex disassembly IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043570 maintenance of DNA repeat elements IEP HCCA
BP GO:0043622 cortical microtubule organization IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0044273 sulfur compound catabolic process IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
BP GO:0045786 negative regulation of cell cycle IEP HCCA
BP GO:0045857 negative regulation of molecular function, epigenetic IEP HCCA
BP GO:0045910 negative regulation of DNA recombination IEP HCCA
BP GO:0045930 negative regulation of mitotic cell cycle IEP HCCA
BP GO:0046439 L-cysteine metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0048209 regulation of vesicle targeting, to, from or within Golgi IEP HCCA
BP GO:0048449 floral organ formation IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0048573 photoperiodism, flowering IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0050821 protein stabilization IEP HCCA
MF GO:0051010 microtubule plus-end binding IEP HCCA
MF GO:0051011 microtubule minus-end binding IEP HCCA
BP GO:0051053 negative regulation of DNA metabolic process IEP HCCA
BP GO:0051129 negative regulation of cellular component organization IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051493 regulation of cytoskeleton organization IEP HCCA
BP GO:0051494 negative regulation of cytoskeleton organization IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0060341 regulation of cellular localization IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0070507 regulation of microtubule cytoskeleton organization IEP HCCA
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP HCCA
BP GO:0071489 cellular response to red or far red light IEP HCCA
BP GO:0071985 multivesicular body sorting pathway IEP HCCA
MF GO:0080146 L-cysteine desulfhydrase activity IEP HCCA
BP GO:0090056 regulation of chlorophyll metabolic process IEP HCCA
BP GO:0090421 embryonic meristem initiation IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
MF GO:0140030 modification-dependent protein binding IEP HCCA
MF GO:0140034 methylation-dependent protein binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140323 solute:anion antiporter activity IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901401 regulation of tetrapyrrole metabolic process IEP HCCA
BP GO:1901402 negative regulation of tetrapyrrole metabolic process IEP HCCA
BP GO:1901463 regulation of tetrapyrrole biosynthetic process IEP HCCA
BP GO:1901464 negative regulation of tetrapyrrole biosynthetic process IEP HCCA
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1901879 regulation of protein depolymerization IEP HCCA
BP GO:1901880 negative regulation of protein depolymerization IEP HCCA
BP GO:1901988 negative regulation of cell cycle phase transition IEP HCCA
BP GO:1902325 negative regulation of chlorophyll biosynthetic process IEP HCCA
BP GO:1902903 regulation of supramolecular fiber organization IEP HCCA
BP GO:1902904 negative regulation of supramolecular fiber organization IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
BP GO:1905393 plant organ formation IEP HCCA
CC GO:1990391 DNA repair complex IEP HCCA
InterPro domains Description Start Stop
IPR007231 Nucleoporin_int_Nup93/Nic96 245 822
PLAZA 3.0 Dicots AT2G41620