1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT2G42470

AT2G42470


Description : TRAF-like family protein


Gene families : OG_01_0000081 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000081_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G42470
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AT1G31370 No alias Ubiquitin-specific protease family C19-related protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G31380 No alias TRAF-like family protein 0.1 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G31390 No alias TRAF-like family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G31400 No alias TRAF-like family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G01790 No alias TRAF-like family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G05420 No alias TRAF-like family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G42455 No alias No description available 0.16 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G42460 No alias TRAF-like family protein 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G29580 No alias Arabidopsis phospholipase-like protein (PEARLI 4) with... 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G44790 No alias TRAF-like family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G44805 No alias TRAF-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58210 No alias TRAF-like family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58280 No alias Arabidopsis phospholipase-like protein (PEARLI 4) with... 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58300 No alias Arabidopsis phospholipase-like protein (PEARLI 4) family 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58320 No alias Ubiquitin-specific protease family C19-related protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58340 No alias TRAF-like family protein 0.16 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58370 No alias TRAF-like family protein 0.11 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58400 No alias TRAF-like family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58440 No alias TRAF-like superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004708 MAP kinase kinase activity IEP HCCA
MF GO:0005337 nucleoside transmembrane transporter activity IEP HCCA
MF GO:0005351 carbohydrate:proton symporter activity IEP HCCA
MF GO:0005402 carbohydrate:cation symporter activity IEP HCCA
CC GO:0005887 integral component of plasma membrane IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0008420 RNA polymerase II CTD heptapeptide repeat phosphatase activity IEP HCCA
MF GO:0008519 ammonium transmembrane transporter activity IEP HCCA
BP GO:0010208 pollen wall assembly IEP HCCA
BP GO:0010584 pollen exine formation IEP HCCA
BP GO:0010927 cellular component assembly involved in morphogenesis IEP HCCA
MF GO:0015095 magnesium ion transmembrane transporter activity IEP HCCA
MF GO:0015114 phosphate ion transmembrane transporter activity IEP HCCA
MF GO:0015144 carbohydrate transmembrane transporter activity IEP HCCA
MF GO:0015145 monosaccharide transmembrane transporter activity IEP HCCA
MF GO:0015398 high-affinity secondary active ammonium transmembrane transporter activity IEP HCCA
BP GO:0015695 organic cation transport IEP HCCA
BP GO:0015749 monosaccharide transmembrane transport IEP HCCA
BP GO:0015858 nucleoside transport IEP HCCA
BP GO:0018126 protein hydroxylation IEP HCCA
BP GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline IEP HCCA
BP GO:0019511 peptidyl-proline hydroxylation IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0034219 carbohydrate transmembrane transport IEP HCCA
MF GO:0051119 sugar transmembrane transporter activity IEP HCCA
BP GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain IEP HCCA
BP GO:0072488 ammonium transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR002083 MATH/TRAF_dom 40 150
IPR002083 MATH/TRAF_dom 496 615
PLAZA 3.0 Dicots AT2G42470