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  5. Zci_09764.2

Zci_09764.2


Description : nascent RNA chaperone (LA)


Gene families : OG_01_0002616 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002616_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zci_09764.2
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
AT4G32720 No alias La protein 1 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g04820.1 No alias RNA chaperone (LA). rRNA chaperone (IRP2) 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c21_14880V3.1 No alias La protein 1 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP HCCA
MF GO:0015020 glucuronosyltransferase activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0030173 integral component of Golgi membrane IEP HCCA
CC GO:0031228 intrinsic component of Golgi membrane IEP HCCA
CC GO:0031300 intrinsic component of organelle membrane IEP HCCA
CC GO:0031301 integral component of organelle membrane IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR006630 La_HTH 95 161
IPR000504 RRM_dom 201 253
IPR014886 La_xRRM 417 504
No external refs found!