AT2G42720

Description : FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein

Gene families : OG_01_0000021 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G42720
Cluster	HCCA: Cluster_40

Target	Alias	Description	ECC score	Gene Family Method
AT1G48400	No alias	F-box/RNI-like/FBD-like domains-containing protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G52650	No alias	F-box/RNI-like superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G29930	No alias	F-box/RNI-like superfamily protein	0.11	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G44060	No alias	F-box/RNI-like superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G44080	No alias	F-box family protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G44090	No alias	F-box family protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G44180	No alias	syntaxin-related family protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G49150	No alias	F-box/RNI-like superfamily protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G54160	No alias	RNI-like superfamily protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58820	No alias	F-box/RNI-like superfamily protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58880	No alias	F-box/RNI-like superfamily protein	0.07	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58920	No alias	F-box/RNI-like superfamily protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58950	No alias	F-box/RNI-like superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58960	No alias	F-box/RNI-like/FBD-like domains-containing protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G59160	No alias	F-box/RNI-like superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G59170	No alias	F-box/RNI-like superfamily protein	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G59230	No alias	RNI-like superfamily protein	0.1	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G59240	No alias	RNI-like superfamily protein	0.09	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G62440	No alias	F-box/RNI-like superfamily protein	0.08	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G33560	No alias	Wound-responsive family protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G15620	No alias	F-box/RNI-like superfamily protein	0.08	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G25860	No alias	F-box/RNI-like superfamily protein	0.11	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G35926	No alias	Protein with RNI-like/FBD-like domains	0.09	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G38396	No alias	F-box/RNI-like superfamily protein	0.08	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G41630	No alias	F-box/RNI-like superfamily protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G41830	No alias	RNI-like superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0000003	reproduction	None	Extended
BP	GO:0000723	telomere maintenance	None	Extended
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	RCA	Interproscan
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007059	chromosome segregation	RCA	Interproscan
BP	GO:0007062	sister chromatid cohesion	RCA	Interproscan
BP	GO:0007129	homologous chromosome pairing at meiosis	RCA	Interproscan
BP	GO:0007131	reciprocal meiotic recombination	RCA	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010212	response to ionizing radiation	None	Extended
BP	GO:0010332	response to gamma radiation	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031048	heterochromatin assembly by small RNA	RCA	Interproscan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031507	heterochromatin assembly	None	Extended
BP	GO:0032200	telomere organization	None	Extended
BP	GO:0032204	regulation of telomere maintenance	RCA	Interproscan
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032504	multicellular organism reproduction	RCA	Interproscan
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0033044	regulation of chromosome organization	RCA	Interproscan
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035825	homologous recombination	None	Extended
BP	GO:0040029	regulation of gene expression, epigenetic	None	Extended
BP	GO:0042138	meiotic DNA double-strand break formation	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043247	telomere maintenance in response to DNA damage	RCA	Interproscan
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0045132	meiotic chromosome segregation	RCA	Interproscan
BP	GO:0045814	negative regulation of gene expression, epigenetic	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061982	meiosis I cell cycle process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	None	Extended
BP	GO:0070828	heterochromatin organization	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	None	Extended
BP	GO:0098813	nuclear chromosome segregation	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140527	reciprocal homologous recombination	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000976	transcription cis-regulatory region binding	IEP	HCCA
MF	GO:0000987	cis-regulatory region sequence-specific DNA binding	IEP	HCCA
MF	GO:0001067	transcription regulatory region nucleic acid binding	IEP	HCCA
CC	GO:0001673	male germ cell nucleus	IEP	HCCA
MF	GO:0004108	citrate (Si)-synthase activity	IEP	HCCA
MF	GO:0004860	protein kinase inhibitor activity	IEP	HCCA
MF	GO:0004861	cyclin-dependent protein serine/threonine kinase inhibitor activity	IEP	HCCA
MF	GO:0004871	obsolete signal transducer activity	IEP	HCCA
MF	GO:0005253	anion channel activity	IEP	HCCA
CC	GO:0005741	mitochondrial outer membrane	IEP	HCCA
BP	GO:0006099	tricarboxylic acid cycle	IEP	HCCA
MF	GO:0008308	voltage-gated anion channel activity	IEP	HCCA
BP	GO:0010098	suspensor development	IEP	HCCA
BP	GO:0010214	seed coat development	IEP	HCCA
BP	GO:0010222	stem vascular tissue pattern formation	IEP	HCCA
BP	GO:0010588	cotyledon vascular tissue pattern formation	IEP	HCCA
MF	GO:0019210	kinase inhibitor activity	IEP	HCCA
MF	GO:0030291	protein serine/threonine kinase inhibitor activity	IEP	HCCA
MF	GO:0030332	cyclin binding	IEP	HCCA
MF	GO:0036440	citrate synthase activity	IEP	HCCA
CC	GO:0043073	germ cell nucleus	IEP	HCCA
MF	GO:0046912	acyltransferase, acyl groups converted into alkyl on transfer	IEP	HCCA
BP	GO:0048598	embryonic morphogenesis	IEP	HCCA
BP	GO:0048830	adventitious root development	IEP	HCCA
BP	GO:0080159	zygote elongation	IEP	HCCA
MF	GO:1990837	sequence-specific double-stranded DNA binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013101	Leu-rich_rpt_2	159	185
IPR001810	F-box_dom	3	37

External Links

PLAZA 3.0 Dicots	AT2G42720

AT2G42720

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation