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AT2G42780


Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).


Gene families : OG_01_0004288 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0004288_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G42780
Cluster HCCA: Cluster_68


Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP HCCA
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP HCCA
BP GO:0000303 response to superoxide IEP HCCA
BP GO:0000305 response to oxygen radical IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
BP GO:0002218 activation of innate immune response IEP HCCA
BP GO:0002253 activation of immune response IEP HCCA
BP GO:0002684 positive regulation of immune system process IEP HCCA
BP GO:0002833 positive regulation of response to biotic stimulus IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004707 MAP kinase activity IEP HCCA
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005743 mitochondrial inner membrane IEP HCCA
CC GO:0005774 vacuolar membrane IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006625 protein targeting to peroxisome IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
BP GO:0006970 response to osmotic stress IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0008514 organic anion transmembrane transporter activity IEP HCCA
BP GO:0009403 toxin biosynthetic process IEP HCCA
BP GO:0009404 toxin metabolic process IEP HCCA
CC GO:0009524 phragmoplast IEP HCCA
CC GO:0009574 preprophase band IEP HCCA
BP GO:0009651 response to salt stress IEP HCCA
BP GO:0009700 indole phytoalexin biosynthetic process IEP HCCA
CC GO:0009705 plant-type vacuole membrane IEP HCCA
BP GO:0009723 response to ethylene IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0009738 abscisic acid-activated signaling pathway IEP HCCA
BP GO:0009755 hormone-mediated signaling pathway IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway IEP HCCA
BP GO:0009958 positive gravitropism IEP HCCA
BP GO:0010120 camalexin biosynthetic process IEP HCCA
BP GO:0010224 response to UV-B IEP HCCA
BP GO:0010229 inflorescence development IEP HCCA
BP GO:0010351 lithium ion transport IEP HCCA
BP GO:0010374 stomatal complex development IEP HCCA
MF GO:0015215 nucleotide transmembrane transporter activity IEP HCCA
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP HCCA
MF GO:0015228 coenzyme A transmembrane transporter activity IEP HCCA
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP HCCA
BP GO:0015919 peroxisomal membrane transport IEP HCCA
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016558 protein import into peroxisome matrix IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0019748 secondary metabolic process IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0031349 positive regulation of defense response IEP HCCA
BP GO:0032103 positive regulation of response to external stimulus IEP HCCA
BP GO:0033993 response to lipid IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0043574 peroxisomal transport IEP HCCA
BP GO:0044743 protein transmembrane import into intracellular organelle IEP HCCA
BP GO:0045089 positive regulation of innate immune response IEP HCCA
BP GO:0046217 indole phytoalexin metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048364 root development IEP HCCA
BP GO:0048527 lateral root development IEP HCCA
BP GO:0048528 post-embryonic root development IEP HCCA
BP GO:0048530 fruit morphogenesis IEP HCCA
BP GO:0048584 positive regulation of response to stimulus IEP HCCA
BP GO:0050778 positive regulation of immune response IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0052314 phytoalexin metabolic process IEP HCCA
BP GO:0052315 phytoalexin biosynthetic process IEP HCCA
BP GO:0052317 camalexin metabolic process IEP HCCA
MF GO:0071077 adenosine 3',5'-bisphosphate transmembrane transporter activity IEP HCCA
BP GO:0072662 protein localization to peroxisome IEP HCCA
BP GO:0072663 establishment of protein localization to peroxisome IEP HCCA
BP GO:0080136 priming of cellular response to stress IEP HCCA
BP GO:0090558 plant epidermis development IEP HCCA
BP GO:0090567 reproductive shoot system development IEP HCCA
BP GO:0090696 post-embryonic plant organ development IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:0099402 plant organ development IEP HCCA
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP HCCA
BP GO:2000037 regulation of stomatal complex patterning IEP HCCA
BP GO:2000038 regulation of stomatal complex development IEP HCCA
InterPro domains Description Start Stop
IPR010684 RNA_pol_II_trans_fac_SIII_A 28 139
PLAZA 3.0 Dicots AT2G42780