AT2G43010

Description : phytochrome interacting factor 4

Gene families : OG_01_0012233 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G43010
Cluster	HCCA: Cluster_141

Type	GO Term	Name	Evidence	Source
BP	GO:0000165	MAPK cascade	RCA	Interproscan
BP	GO:0002682	regulation of immune system process	None	Extended
BP	GO:0002831	regulation of response to biotic stimulus	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IDA	Interproscan
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	RCA	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	RCA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006873	cellular ion homeostasis	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007623	circadian rhythm	RCA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009606	tropism	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	RCA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009629	response to gravity	None	Extended
BP	GO:0009630	gravitropism	RCA	Interproscan
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009704	de-etiolation	IMP	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009863	salicylic acid mediated signaling pathway	None	Extended
BP	GO:0009867	jasmonic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010017	red or far-red light signaling pathway	IMP	Interproscan
BP	GO:0010017	red or far-red light signaling pathway	RCA	Interproscan
BP	GO:0010114	response to red light	None	Extended
BP	GO:0010161	red light signaling pathway	IGI	Interproscan
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	RCA	Interproscan
BP	GO:0010363	regulation of plant-type hypersensitive response	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010600	regulation of auxin biosynthetic process	IDA	Interproscan
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0010928	regulation of auxin mediated signaling pathway	IDA	Interproscan
BP	GO:0010941	regulation of cell death	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019220	regulation of phosphate metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019725	cellular homeostasis	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0030003	cellular cation homeostasis	RCA	Interproscan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031347	regulation of defense response	None	Extended
BP	GO:0031348	negative regulation of defense response	RCA	Interproscan
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0032268	regulation of cellular protein metabolic process	None	Extended
BP	GO:0032350	regulation of hormone metabolic process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0034613	cellular protein localization	None	Extended
BP	GO:0035303	regulation of dephosphorylation	None	Extended
BP	GO:0035304	regulation of protein dephosphorylation	RCA	Interproscan
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
BP	GO:0043067	regulation of programmed cell death	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045088	regulation of innate immune response	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046885	regulation of hormone biosynthetic process	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048511	rhythmic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048878	chemical homeostasis	None	Extended
BP	GO:0050776	regulation of immune response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050801	ion homeostasis	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051174	regulation of phosphorus metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051668	localization within membrane	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0055080	cation homeostasis	None	Extended
BP	GO:0055082	cellular chemical homeostasis	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071214	cellular response to abiotic stimulus	None	Extended
BP	GO:0071478	cellular response to radiation	None	Extended
BP	GO:0071482	cellular response to light stimulus	None	Extended
BP	GO:0071489	cellular response to red or far red light	None	Extended
BP	GO:0071491	cellular response to red light	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
BP	GO:0090354	regulation of auxin metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0104004	cellular response to environmental stimulus	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000377	regulation of reactive oxygen species metabolic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000900	translation repressor activity, mRNA regulatory element binding	IEP	HCCA
MF	GO:0004871	obsolete signal transducer activity	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006520	cellular amino acid metabolic process	IEP	HCCA
BP	GO:0006568	tryptophan metabolic process	IEP	HCCA
BP	GO:0006569	tryptophan catabolic process	IEP	HCCA
BP	GO:0006576	cellular biogenic amine metabolic process	IEP	HCCA
BP	GO:0006586	indolalkylamine metabolic process	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006650	glycerophospholipid metabolic process	IEP	HCCA
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006995	cellular response to nitrogen starvation	IEP	HCCA
BP	GO:0007602	phototransduction	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
BP	GO:0009063	cellular amino acid catabolic process	IEP	HCCA
BP	GO:0009072	aromatic amino acid family metabolic process	IEP	HCCA
BP	GO:0009074	aromatic amino acid family catabolic process	IEP	HCCA
BP	GO:0009310	amine catabolic process	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009534	chloroplast thylakoid	IEP	HCCA
CC	GO:0009535	chloroplast thylakoid membrane	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
CC	GO:0009579	thylakoid	IEP	HCCA
BP	GO:0009581	detection of external stimulus	IEP	HCCA
BP	GO:0009582	detection of abiotic stimulus	IEP	HCCA
BP	GO:0009583	detection of light stimulus	IEP	HCCA
BP	GO:0009585	red, far-red light phototransduction	IEP	HCCA
BP	GO:0009637	response to blue light	IEP	HCCA
BP	GO:0009638	phototropism	IEP	HCCA
BP	GO:0009683	indoleacetic acid metabolic process	IEP	HCCA
BP	GO:0009684	indoleacetic acid biosynthetic process	IEP	HCCA
BP	GO:0009718	anthocyanin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0009765	photosynthesis, light harvesting	IEP	HCCA
BP	GO:0009769	photosynthesis, light harvesting in photosystem II	IEP	HCCA
BP	GO:0009785	blue light signaling pathway	IEP	HCCA
BP	GO:0009812	flavonoid metabolic process	IEP	HCCA
BP	GO:0009813	flavonoid biosynthetic process	IEP	HCCA
MF	GO:0009815	1-aminocyclopropane-1-carboxylate oxidase activity	IEP	HCCA
BP	GO:0009850	auxin metabolic process	IEP	HCCA
BP	GO:0009851	auxin biosynthetic process	IEP	HCCA
MF	GO:0009881	photoreceptor activity	IEP	HCCA
MF	GO:0009882	blue light photoreceptor activity	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
CC	GO:0009898	cytoplasmic side of plasma membrane	IEP	HCCA
BP	GO:0009903	chloroplast avoidance movement	IEP	HCCA
BP	GO:0009904	chloroplast accumulation movement	IEP	HCCA
BP	GO:0009965	leaf morphogenesis	IEP	HCCA
CC	GO:0009986	cell surface	IEP	HCCA
BP	GO:0009991	response to extracellular stimulus	IEP	HCCA
BP	GO:0010022	meristem determinacy	IEP	HCCA
BP	GO:0010023	proanthocyanidin biosynthetic process	IEP	HCCA
BP	GO:0010076	maintenance of floral meristem identity	IEP	HCCA
BP	GO:0010119	regulation of stomatal movement	IEP	HCCA
BP	GO:0010155	regulation of proton transport	IEP	HCCA
MF	GO:0010181	FMN binding	IEP	HCCA
BP	GO:0010190	cytochrome b6f complex assembly	IEP	HCCA
CC	GO:0010287	plastoglobule	IEP	HCCA
BP	GO:0010322	regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	IEP	HCCA
BP	GO:0010343	singlet oxygen-mediated programmed cell death	IEP	HCCA
BP	GO:0010360	negative regulation of anion channel activity	IEP	HCCA
BP	GO:0010361	regulation of anion channel activity by blue light	IEP	HCCA
BP	GO:0010362	negative regulation of anion channel activity by blue light	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010582	floral meristem determinacy	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010617	circadian regulation of calcium ion oscillation	IEP	HCCA
BP	GO:0010675	regulation of cellular carbohydrate metabolic process	IEP	HCCA
MF	GO:0015020	glucuronosyltransferase activity	IEP	HCCA
BP	GO:0015994	chlorophyll metabolic process	IEP	HCCA
BP	GO:0016054	organic acid catabolic process	IEP	HCCA
BP	GO:0016144	S-glycoside biosynthetic process	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
BP	GO:0017004	cytochrome complex assembly	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
BP	GO:0019747	regulation of isoprenoid metabolic process	IEP	HCCA
BP	GO:0019758	glycosinolate biosynthetic process	IEP	HCCA
BP	GO:0019761	glucosinolate biosynthetic process	IEP	HCCA
CC	GO:0030076	light-harvesting complex	IEP	HCCA
BP	GO:0030154	cell differentiation	IEP	HCCA
MF	GO:0030371	translation repressor activity	IEP	HCCA
BP	GO:0030522	intracellular receptor signaling pathway	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
CC	GO:0031350	intrinsic component of plastid membrane	IEP	HCCA
CC	GO:0031351	integral component of plastid membrane	IEP	HCCA
CC	GO:0031352	intrinsic component of plastid inner membrane	IEP	HCCA
CC	GO:0031353	integral component of plastid inner membrane	IEP	HCCA
CC	GO:0031356	intrinsic component of chloroplast inner membrane	IEP	HCCA
CC	GO:0031357	integral component of chloroplast inner membrane	IEP	HCCA
BP	GO:0031668	cellular response to extracellular stimulus	IEP	HCCA
CC	GO:0031976	plastid thylakoid	IEP	HCCA
BP	GO:0032410	negative regulation of transporter activity	IEP	HCCA
BP	GO:0032413	negative regulation of ion transmembrane transporter activity	IEP	HCCA
BP	GO:0032879	regulation of localization	IEP	HCCA
CC	GO:0034357	photosynthetic membrane	IEP	HCCA
BP	GO:0034754	cellular hormone metabolic process	IEP	HCCA
BP	GO:0034762	regulation of transmembrane transport	IEP	HCCA
BP	GO:0034763	negative regulation of transmembrane transport	IEP	HCCA
BP	GO:0034765	regulation of ion transmembrane transport	IEP	HCCA
BP	GO:0034766	negative regulation of ion transmembrane transport	IEP	HCCA
BP	GO:0036473	cell death in response to oxidative stress	IEP	HCCA
MF	GO:0038023	signaling receptor activity	IEP	HCCA
CC	GO:0042170	plastid membrane	IEP	HCCA
BP	GO:0042402	cellular biogenic amine catabolic process	IEP	HCCA
BP	GO:0042430	indole-containing compound metabolic process	IEP	HCCA
BP	GO:0042435	indole-containing compound biosynthetic process	IEP	HCCA
BP	GO:0042436	indole-containing compound catabolic process	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
BP	GO:0042445	hormone metabolic process	IEP	HCCA
BP	GO:0042446	hormone biosynthetic process	IEP	HCCA
BP	GO:0042631	cellular response to water deprivation	IEP	HCCA
CC	GO:0042651	thylakoid membrane	IEP	HCCA
MF	GO:0042802	identical protein binding	IEP	HCCA
BP	GO:0043085	positive regulation of catalytic activity	IEP	HCCA
BP	GO:0043269	regulation of ion transport	IEP	HCCA
BP	GO:0043271	negative regulation of ion transport	IEP	HCCA
BP	GO:0044093	positive regulation of molecular function	IEP	HCCA
BP	GO:0044106	cellular amine metabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	HCCA
BP	GO:0045017	glycerolipid biosynthetic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0045893	positive regulation of transcription, DNA-templated	IEP	HCCA
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0046148	pigment biosynthetic process	IEP	HCCA
BP	GO:0046218	indolalkylamine catabolic process	IEP	HCCA
BP	GO:0046283	anthocyanin-containing compound metabolic process	IEP	HCCA
BP	GO:0046395	carboxylic acid catabolic process	IEP	HCCA
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	HCCA
BP	GO:0046486	glycerolipid metabolic process	IEP	HCCA
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0046777	protein autophosphorylation	IEP	HCCA
BP	GO:0046890	regulation of lipid biosynthetic process	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0048869	cellular developmental process	IEP	HCCA
BP	GO:0050790	regulation of catalytic activity	IEP	HCCA
BP	GO:0051049	regulation of transport	IEP	HCCA
BP	GO:0051051	negative regulation of transport	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051341	regulation of oxidoreductase activity	IEP	HCCA
BP	GO:0051353	positive regulation of oxidoreductase activity	IEP	HCCA
BP	GO:0051480	regulation of cytosolic calcium ion concentration	IEP	HCCA
BP	GO:0051606	detection of stimulus	IEP	HCCA
CC	GO:0055035	plastid thylakoid membrane	IEP	HCCA
MF	GO:0060089	molecular transducer activity	IEP	HCCA
BP	GO:0061077	chaperone-mediated protein folding	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
BP	GO:0070417	cellular response to cold	IEP	HCCA
BP	GO:0071071	regulation of phospholipid biosynthetic process	IEP	HCCA
BP	GO:0071229	cellular response to acid chemical	IEP	HCCA
BP	GO:0071462	cellular response to water stimulus	IEP	HCCA
BP	GO:0071483	cellular response to blue light	IEP	HCCA
BP	GO:0071496	cellular response to external stimulus	IEP	HCCA
BP	GO:0080036	regulation of cytokinin-activated signaling pathway	IEP	HCCA
BP	GO:0080037	negative regulation of cytokinin-activated signaling pathway	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:0097468	programmed cell death in response to reactive oxygen species	IEP	HCCA
CC	GO:0098552	side of membrane	IEP	HCCA
CC	GO:0098562	cytoplasmic side of membrane	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901606	alpha-amino acid catabolic process	IEP	HCCA
BP	GO:1901659	glycosyl compound biosynthetic process	IEP	HCCA
BP	GO:1901701	cellular response to oxygen-containing compound	IEP	HCCA
BP	GO:1902395	regulation of 1-deoxy-D-xylulose-5-phosphate synthase activity	IEP	HCCA
BP	GO:1902551	regulation of catalase activity	IEP	HCCA
BP	GO:1902553	positive regulation of catalase activity	IEP	HCCA
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:1903725	regulation of phospholipid metabolic process	IEP	HCCA
BP	GO:1903792	negative regulation of anion transport	IEP	HCCA
BP	GO:1903960	negative regulation of anion transmembrane transport	IEP	HCCA
BP	GO:1904062	regulation of cation transmembrane transport	IEP	HCCA
BP	GO:1905392	plant organ morphogenesis	IEP	HCCA
BP	GO:2000071	regulation of defense response by callose deposition	IEP	HCCA
BP	GO:2000468	regulation of peroxidase activity	IEP	HCCA
BP	GO:2000470	positive regulation of peroxidase activity	IEP	HCCA
BP	GO:2000762	regulation of phenylpropanoid metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	261	307

External Links

PLAZA 3.0 Dicots	AT2G43010

AT2G43010

Expression Profile

Co-expression Networks

Functional Annotation