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  5. Zci_10322.1

Zci_10322.1


Description : cold-responsive mRNA chaperone (CSD)


Gene families : OG_01_0001702 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001702_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zci_10322.1
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
Pp3c5_6070V3.1 No alias glycine-rich protein 2B 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_7880V3.1 No alias No annotation 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP HCCA
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP HCCA
CC GO:0005666 RNA polymerase III complex IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006383 transcription by RNA polymerase III IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0019725 cellular homeostasis IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0045454 cell redox homeostasis IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
InterPro domains Description Start Stop
IPR002059 CSP_DNA-bd 13 76
IPR001878 Znf_CCHC 167 184
IPR001878 Znf_CCHC 133 150
No external refs found!