AT2G43410

Description : RNA binding

Gene families : OG_01_0006287 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0006287_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G43410
Cluster	HCCA: Cluster_224

Type	GO Term	Name	Evidence	Source
CC	GO:0000785	chromatin	IDA	Interproscan
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006378	mRNA polyadenylation	IDA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009553	embryo sac development	IGI	Interproscan
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009909	regulation of flower development	None	Extended
BP	GO:0009911	positive regulation of flower development	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IMP	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031048	heterochromatin assembly by small RNA	IMP	Interproscan
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0031124	mRNA 3'-end processing	None	Extended
BP	GO:0031507	heterochromatin assembly	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0040029	regulation of gene expression, epigenetic	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043631	RNA polyadenylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045814	negative regulation of gene expression, epigenetic	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048582	positive regulation of post-embryonic development	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0051094	positive regulation of developmental process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051240	positive regulation of multicellular organismal process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070828	heterochromatin organization	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended
BP	GO:2000243	positive regulation of reproductive process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	HCCA
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
MF	GO:0003729	mRNA binding	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005516	calmodulin binding	IEP	HCCA
MF	GO:0005527	macrolide binding	IEP	HCCA
MF	GO:0005528	FK506 binding	IEP	HCCA
CC	GO:0005635	nuclear envelope	IEP	HCCA
CC	GO:0005681	spliceosomal complex	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005819	spindle	IEP	HCCA
BP	GO:0006109	regulation of carbohydrate metabolic process	IEP	HCCA
BP	GO:0006376	mRNA splice site selection	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006464	cellular protein modification process	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0008154	actin polymerization or depolymerization	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
CC	GO:0009524	phragmoplast	IEP	HCCA
BP	GO:0009611	response to wounding	IEP	HCCA
BP	GO:0009642	response to light intensity	IEP	HCCA
BP	GO:0009644	response to high light intensity	IEP	HCCA
BP	GO:0009846	pollen germination	IEP	HCCA
BP	GO:0009960	endosperm development	IEP	HCCA
BP	GO:0010208	pollen wall assembly	IEP	HCCA
BP	GO:0010584	pollen exine formation	IEP	HCCA
BP	GO:0010675	regulation of cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0010927	cellular component assembly involved in morphogenesis	IEP	HCCA
BP	GO:0010962	regulation of glucan biosynthetic process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
MF	GO:0016307	phosphatidylinositol phosphate kinase activity	IEP	HCCA
MF	GO:0016308	1-phosphatidylinositol-4-phosphate 5-kinase activity	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
CC	GO:0016604	nuclear body	IEP	HCCA
CC	GO:0016607	nuclear speck	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
BP	GO:0030041	actin filament polymerization	IEP	HCCA
BP	GO:0030968	endoplasmic reticulum unfolded protein response	IEP	HCCA
MF	GO:0031176	endo-1,4-beta-xylanase activity	IEP	HCCA
MF	GO:0032266	phosphatidylinositol-3-phosphate binding	IEP	HCCA
BP	GO:0032881	regulation of polysaccharide metabolic process	IEP	HCCA
BP	GO:0032885	regulation of polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0032950	regulation of beta-glucan metabolic process	IEP	HCCA
BP	GO:0032951	regulation of beta-glucan biosynthetic process	IEP	HCCA
BP	GO:0032952	regulation of (1->3)-beta-D-glucan metabolic process	IEP	HCCA
BP	GO:0032953	regulation of (1->3)-beta-D-glucan biosynthetic process	IEP	HCCA
MF	GO:0033218	amide binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0034605	cellular response to heat	IEP	HCCA
BP	GO:0034622	cellular protein-containing complex assembly	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
BP	GO:0034976	response to endoplasmic reticulum stress	IEP	HCCA
CC	GO:0035061	interchromatin granule	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0042742	defense response to bacterium	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043255	regulation of carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0043484	regulation of RNA splicing	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0048024	regulation of mRNA splicing, via spliceosome	IEP	HCCA
BP	GO:0048317	seed morphogenesis	IEP	HCCA
BP	GO:0050684	regulation of mRNA processing	IEP	HCCA
BP	GO:0051258	protein polymerization	IEP	HCCA
BP	GO:0052542	defense response by callose deposition	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0070370	cellular heat acclimation	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
CC	GO:0071944	cell periphery	IEP	HCCA
MF	GO:0080025	phosphatidylinositol-3,5-bisphosphate binding	IEP	HCCA
MF	GO:0097599	xylanase activity	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
MF	GO:1901981	phosphatidylinositol phosphate binding	IEP	HCCA
MF	GO:1902936	phosphatidylinositol bisphosphate binding	IEP	HCCA
BP	GO:1903311	regulation of mRNA metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012921	SPOC_C	393	516
IPR000504	RRM_dom	97	159
IPR000504	RRM_dom	20	84
IPR000504	RRM_dom	222	274

External Links

PLAZA 3.0 Dicots	AT2G43410

AT2G43410

Expression Profile

Co-expression Networks

Functional Annotation