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  5. Zci_10560.1

Zci_10560.1


Description : component uS4 of SSU proteome


Gene families : OG_01_0001103 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001103_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zci_10560.1
Cluster HCCA: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
AT5G15200 No alias Ribosomal protein S4 0.29 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre08.g359750 No alias 40S ribosomal protein S9-1 OS=Arabidopsis thaliana 0.27 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g00520.1 No alias component RPS9 of SSU proteome 0.22 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp6g10930.1 No alias component RPS9 of SSU proteome 0.2 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c12_9190V3.1 No alias Ribosomal protein S4 0.21 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_19780V3.1 No alias Ribosomal protein S4 0.18 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c27_1920V3.1 No alias Ribosomal protein S4 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_23720V3.1 No alias Ribosomal protein S4 0.22 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_15290V3.1 No alias Ribosomal protein S4 0.19 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_17680V3.1 No alias Ribosomal protein S4 0.17 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0043603 cellular amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044267 cellular protein metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071985 multivesicular body sorting pathway IEP HCCA
BP GO:0110102 ribulose bisphosphate carboxylase complex assembly IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001912 Ribosomal_S4/S9_N 15 63
No external refs found!