AT2G45890

Description : RHO guanyl-nucleotide exchange factor 4

Gene families : OG_01_0000318 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000318_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G45890
Cluster	HCCA: Cluster_93

Target	Alias	Description	ECC score	Gene Family Method	Actions
AT1G79860	No alias	RHO guanyl-nucleotide exchange factor 12	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009505	plant-type cell wall	None	Extended
CC	GO:0009531	secondary cell wall	IDA	Interproscan
BP	GO:0009664	plant-type cell wall organization	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010383	cell wall polysaccharide metabolic process	None	Extended
BP	GO:0010410	hemicellulose metabolic process	None	Extended
BP	GO:0010413	glucuronoxylan metabolic process	RCA	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044038	cell wall macromolecule biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0045491	xylan metabolic process	None	Extended
BP	GO:0045492	xylan biosynthetic process	RCA	Interproscan
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048767	root hair elongation	IMP	Interproscan
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0070589	cellular component macromolecule biosynthetic process	None	Extended
BP	GO:0070592	cell wall polysaccharide biosynthetic process	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	HCCA
BP	GO:0000902	cell morphogenesis	IEP	HCCA
BP	GO:0002238	response to molecule of fungal origin	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004601	peroxidase activity	IEP	HCCA
MF	GO:0005548	phospholipid transporter activity	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
BP	GO:0006811	ion transport	IEP	HCCA
BP	GO:0006812	cation transport	IEP	HCCA
BP	GO:0006820	anion transport	IEP	HCCA
BP	GO:0006826	iron ion transport	IEP	HCCA
BP	GO:0007154	cell communication	IEP	HCCA
MF	GO:0008417	fucosyltransferase activity	IEP	HCCA
MF	GO:0008493	tetracycline transmembrane transporter activity	IEP	HCCA
MF	GO:0008526	phosphatidylinositol transfer activity	IEP	HCCA
BP	GO:0009267	cellular response to starvation	IEP	HCCA
BP	GO:0009698	phenylpropanoid metabolic process	IEP	HCCA
BP	GO:0009804	coumarin metabolic process	IEP	HCCA
BP	GO:0009805	coumarin biosynthetic process	IEP	HCCA
BP	GO:0009808	lignin metabolic process	IEP	HCCA
BP	GO:0009826	unidimensional cell growth	IEP	HCCA
BP	GO:0009828	plant-type cell wall loosening	IEP	HCCA
BP	GO:0009831	plant-type cell wall modification involved in multidimensional cell growth	IEP	HCCA
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	IEP	HCCA
BP	GO:0009991	response to extracellular stimulus	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0010053	root epidermal cell differentiation	IEP	HCCA
BP	GO:0010054	trichoblast differentiation	IEP	HCCA
BP	GO:0010106	cellular response to iron ion starvation	IEP	HCCA
BP	GO:0010167	response to nitrate	IEP	HCCA
BP	GO:0010411	xyloglucan metabolic process	IEP	HCCA
MF	GO:0015665	alcohol transmembrane transporter activity	IEP	HCCA
BP	GO:0015698	inorganic anion transport	IEP	HCCA
BP	GO:0015706	nitrate transport	IEP	HCCA
MF	GO:0016207	4-coumarate-CoA ligase activity	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
BP	GO:0021700	developmental maturation	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
BP	GO:0030154	cell differentiation	IEP	HCCA
MF	GO:0030599	pectinesterase activity	IEP	HCCA
MF	GO:0030775	glucuronoxylan 4-O-methyltransferase activity	IEP	HCCA
BP	GO:0031667	response to nutrient levels	IEP	HCCA
BP	GO:0031668	cellular response to extracellular stimulus	IEP	HCCA
BP	GO:0031669	cellular response to nutrient levels	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0035864	response to potassium ion	IEP	HCCA
BP	GO:0035865	cellular response to potassium ion	IEP	HCCA
BP	GO:0042547	cell wall modification involved in multidimensional cell growth	IEP	HCCA
BP	GO:0042594	response to starvation	IEP	HCCA
MF	GO:0046409	p-coumarate 3-hydroxylase activity	IEP	HCCA
BP	GO:0048364	root development	IEP	HCCA
BP	GO:0048469	cell maturation	IEP	HCCA
BP	GO:0048527	lateral root development	IEP	HCCA
BP	GO:0048528	post-embryonic root development	IEP	HCCA
BP	GO:0048764	trichoblast maturation	IEP	HCCA
BP	GO:0048765	root hair cell differentiation	IEP	HCCA
BP	GO:0048766	root hair initiation	IEP	HCCA
BP	GO:0048768	root hair cell tip growth	IEP	HCCA
BP	GO:0048869	cellular developmental process	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0055062	phosphate ion homeostasis	IEP	HCCA
BP	GO:0071496	cellular response to external stimulus	IEP	HCCA
BP	GO:0071695	anatomical structure maturation	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0072506	trivalent inorganic anion homeostasis	IEP	HCCA
MF	GO:0080045	quercetin 3'-O-glucosyltransferase activity	IEP	HCCA
BP	GO:0090627	plant epidermal cell differentiation	IEP	HCCA
BP	GO:0090696	post-embryonic plant organ development	IEP	HCCA
MF	GO:0120013	lipid transfer activity	IEP	HCCA
MF	GO:0120014	phospholipid transfer activity	IEP	HCCA
BP	GO:1901698	response to nitrogen compound	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005512	PRONE_dom	93	459

External Links

PLAZA 3.0 Dicots	AT2G45890

AT2G45890

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation