Zci_13213.1

Description : component uS5m of small ribosomal subunit proteome

Gene families : OG_01_0008322 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0008322_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zci_13213.1
Cluster	HCCA: Cluster_136

Target	Alias	Description	ECC score	Gene Family Method	Actions
Pp3c8_16260V3.1	No alias	Ribosomal protein S5 family protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
BP	GO:0000075	cell cycle checkpoint signaling	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004045	aminoacyl-tRNA hydrolase activity	IEP	HCCA
MF	GO:0004177	aminopeptidase activity	IEP	HCCA
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	HCCA
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0005319	lipid transporter activity	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
MF	GO:0005548	phospholipid transporter activity	IEP	HCCA
CC	GO:0005801	cis-Golgi network	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006720	isoprenoid metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006787	porphyrin-containing compound catabolic process	IEP	HCCA
BP	GO:0006869	lipid transport	IEP	HCCA
BP	GO:0007009	plasma membrane organization	IEP	HCCA
BP	GO:0007088	regulation of mitotic nuclear division	IEP	HCCA
BP	GO:0007093	mitotic cell cycle checkpoint signaling	IEP	HCCA
BP	GO:0007094	mitotic spindle assembly checkpoint signaling	IEP	HCCA
BP	GO:0007346	regulation of mitotic cell cycle	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008235	metalloexopeptidase activity	IEP	HCCA
BP	GO:0008299	isoprenoid biosynthetic process	IEP	HCCA
MF	GO:0008962	phosphatidylglycerophosphatase activity	IEP	HCCA
BP	GO:0009116	nucleoside metabolic process	IEP	HCCA
BP	GO:0010564	regulation of cell cycle process	IEP	HCCA
BP	GO:0010639	negative regulation of organelle organization	IEP	HCCA
BP	GO:0010948	negative regulation of cell cycle process	IEP	HCCA
BP	GO:0010965	regulation of mitotic sister chromatid separation	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0015748	organophosphate ester transport	IEP	HCCA
BP	GO:0015914	phospholipid transport	IEP	HCCA
BP	GO:0015994	chlorophyll metabolic process	IEP	HCCA
BP	GO:0015996	chlorophyll catabolic process	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
BP	GO:0017038	protein import	IEP	HCCA
BP	GO:0017121	plasma membrane phospholipid scrambling	IEP	HCCA
MF	GO:0017128	phospholipid scramblase activity	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0030071	regulation of mitotic metaphase/anaphase transition	IEP	HCCA
BP	GO:0031577	spindle checkpoint signaling	IEP	HCCA
MF	GO:0032182	ubiquitin-like protein binding	IEP	HCCA
MF	GO:0032266	phosphatidylinositol-3-phosphate binding	IEP	HCCA
BP	GO:0033015	tetrapyrrole catabolic process	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
BP	GO:0033045	regulation of sister chromatid segregation	IEP	HCCA
BP	GO:0033046	negative regulation of sister chromatid segregation	IEP	HCCA
BP	GO:0033047	regulation of mitotic sister chromatid segregation	IEP	HCCA
BP	GO:0033048	negative regulation of mitotic sister chromatid segregation	IEP	HCCA
BP	GO:0034204	lipid translocation	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
MF	GO:0043130	ubiquitin binding	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0045332	phospholipid translocation	IEP	HCCA
BP	GO:0045786	negative regulation of cell cycle	IEP	HCCA
BP	GO:0045839	negative regulation of mitotic nuclear division	IEP	HCCA
BP	GO:0045841	negative regulation of mitotic metaphase/anaphase transition	IEP	HCCA
BP	GO:0045930	negative regulation of mitotic cell cycle	IEP	HCCA
BP	GO:0046149	pigment catabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0047746	chlorophyllase activity	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051129	negative regulation of cellular component organization	IEP	HCCA
BP	GO:0051726	regulation of cell cycle	IEP	HCCA
BP	GO:0051783	regulation of nuclear division	IEP	HCCA
BP	GO:0051784	negative regulation of nuclear division	IEP	HCCA
BP	GO:0051983	regulation of chromosome segregation	IEP	HCCA
BP	GO:0051985	negative regulation of chromosome segregation	IEP	HCCA
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	HCCA
BP	GO:0061024	membrane organization	IEP	HCCA
BP	GO:0065008	regulation of biological quality	IEP	HCCA
MF	GO:0070001	aspartic-type peptidase activity	IEP	HCCA
MF	GO:0070006	metalloaminopeptidase activity	IEP	HCCA
BP	GO:0071173	spindle assembly checkpoint signaling	IEP	HCCA
BP	GO:0071174	mitotic spindle checkpoint signaling	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0097035	regulation of membrane lipid distribution	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140303	intramembrane lipid transporter activity	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA
BP	GO:1901657	glycosyl compound metabolic process	IEP	HCCA
MF	GO:1901981	phosphatidylinositol phosphate binding	IEP	HCCA
BP	GO:1901987	regulation of cell cycle phase transition	IEP	HCCA
BP	GO:1901988	negative regulation of cell cycle phase transition	IEP	HCCA
BP	GO:1901990	regulation of mitotic cell cycle phase transition	IEP	HCCA
BP	GO:1901991	negative regulation of mitotic cell cycle phase transition	IEP	HCCA
BP	GO:1902099	regulation of metaphase/anaphase transition of cell cycle	IEP	HCCA
BP	GO:1902100	negative regulation of metaphase/anaphase transition of cell cycle	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA
BP	GO:1905818	regulation of chromosome separation	IEP	HCCA
BP	GO:1905819	negative regulation of chromosome separation	IEP	HCCA
BP	GO:2000816	negative regulation of mitotic sister chromatid separation	IEP	HCCA
BP	GO:2001251	negative regulation of chromosome organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013810	Ribosomal_S5_N	187	251
IPR005324	Ribosomal_S5_C	265	332

External Links

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Zci_13213.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation