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  5. Zci_13218.1

Zci_13218.1


Description : large subunit beta of AP-2 cargo adaptor complex


Gene families : OG_01_0003429 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0003429_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zci_13218.1
Cluster HCCA: Cluster_169

Target Alias Description ECC score Gene Family Method Actions
AT4G23460 No alias Adaptin family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre11.g478156 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g25810.1 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_2460V3.1 No alias Adaptin family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_19340V3.1 No alias Adaptin family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
CC GO:0030131 clathrin adaptor complex IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
CC GO:0000781 chromosome, telomeric region IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 nucleoside-triphosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
MF GO:0070122 isopeptidase activity IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
InterPro domains Description Start Stop
IPR015151 B-adaptin_app_sub_C 835 945
IPR002553 Clathrin/coatomer_adapt-like_N 14 133
IPR002553 Clathrin/coatomer_adapt-like_N 155 555
No external refs found!