AT2G47000

Description : ATP binding cassette subfamily B4

Gene families : OG_01_0000146 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000146_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G47000
Cluster	HCCA: Cluster_146

Target	Alias	Description	ECC score	Gene Family Method
AT3G28345	No alias	ABC transporter family protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G28380	No alias	P-glycoprotein 17	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G01820	No alias	P-glycoprotein 3	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G18050	No alias	P-glycoprotein 9	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp2g02910.1	No alias	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g11830.1	No alias	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g04390.1	No alias	subfamily ABCB transporter	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mpzg01120.1	No alias	no hits & (original description: none)	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	None	Extended
BP	GO:0000302	response to reactive oxygen species	None	Extended
BP	GO:0000303	response to superoxide	RCA	Interproscan
BP	GO:0000305	response to oxygen radical	None	Extended
BP	GO:0001101	response to acid chemical	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006865	amino acid transport	None	Extended
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	RCA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0006972	hyperosmotic response	None	Extended
BP	GO:0006979	response to oxidative stress	None	Extended
BP	GO:0007165	signal transduction	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008559	ABC-type xenobiotic transporter activity	IDA	Interproscan
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009404	toxin metabolic process	None	Extended
BP	GO:0009407	toxin catabolic process	RCA	Interproscan
BP	GO:0009414	response to water deprivation	RCA	Interproscan
BP	GO:0009415	response to water	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009606	tropism	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009629	response to gravity	None	Extended
BP	GO:0009630	gravitropism	IMP	Interproscan
BP	GO:0009651	response to salt stress	RCA	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009723	response to ethylene	RCA	Interproscan
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	IEP	Interproscan
BP	GO:0009733	response to auxin	RCA	Interproscan
BP	GO:0009735	response to cytokinin	IEP	Interproscan
BP	GO:0009735	response to cytokinin	RCA	Interproscan
BP	GO:0009737	response to abscisic acid	RCA	Interproscan
BP	GO:0009738	abscisic acid-activated signaling pathway	RCA	Interproscan
BP	GO:0009743	response to carbohydrate	RCA	Interproscan
BP	GO:0009753	response to jasmonic acid	RCA	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009873	ethylene-activated signaling pathway	RCA	Interproscan
BP	GO:0009914	hormone transport	None	Extended
BP	GO:0009926	auxin polar transport	TAS	Interproscan
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010315	auxin efflux	IDA	Interproscan
BP	GO:0010315	auxin efflux	IMP	Interproscan
MF	GO:0010328	auxin influx transmembrane transporter activity	IDA	Interproscan
MF	GO:0010329	auxin efflux transmembrane transporter activity	IDA	Interproscan
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
BP	GO:0010540	basipetal auxin transport	IMP	Interproscan
BP	GO:0010583	response to cyclopentenone	RCA	Interproscan
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0010928	regulation of auxin mediated signaling pathway	None	Extended
BP	GO:0014070	response to organic cyclic compound	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
BP	GO:0015849	organic acid transport	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019748	secondary metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0034622	cellular protein-containing complex assembly	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0035966	response to topologically incorrect protein	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042538	hyperosmotic salinity response	RCA	Interproscan
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	ISS	Interproscan
MF	GO:0042910	xenobiotic transmembrane transporter activity	None	Extended
BP	GO:0043090	amino acid import	RCA	Interproscan
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043248	proteasome assembly	RCA	Interproscan
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0043933	protein-containing complex subunit organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048193	Golgi vesicle transport	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048767	root hair elongation	IMP	Interproscan
BP	GO:0048767	root hair elongation	RCA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051788	response to misfolded protein	RCA	Interproscan
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0060918	auxin transport	None	Extended
BP	GO:0060919	auxin influx	IDA	Interproscan
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0070542	response to fatty acid	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0080161	auxin transmembrane transporter activity	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
BP	GO:0098754	detoxification	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140359	ABC-type transporter activity	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002237	response to molecule of bacterial origin	IEP	HCCA
MF	GO:0003994	aconitate hydratase activity	IEP	HCCA
MF	GO:0004364	glutathione transferase activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
BP	GO:0006101	citrate metabolic process	IEP	HCCA
BP	GO:0006102	isocitrate metabolic process	IEP	HCCA
BP	GO:0006464	cellular protein modification process	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006857	oligopeptide transport	IEP	HCCA
BP	GO:0009060	aerobic respiration	IEP	HCCA
BP	GO:0009819	drought recovery	IEP	HCCA
BP	GO:0010150	leaf senescence	IEP	HCCA
BP	GO:0015833	peptide transport	IEP	HCCA
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0042991	obsolete transcription factor import into nucleus	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0044267	cellular protein metabolic process	IEP	HCCA
BP	GO:0045333	cellular respiration	IEP	HCCA
BP	GO:0048443	stamen development	IEP	HCCA
BP	GO:0072350	tricarboxylic acid metabolic process	IEP	HCCA
BP	GO:0090693	plant organ senescence	IEP	HCCA
BP	GO:1902652	secondary alcohol metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	404	551
IPR011527	ABC1_TM_dom	63	335
IPR011527	ABC1_TM_dom	720	993
IPR003439	ABC_transporter-like_ATP-bd	1061	1210

External Links

PLAZA 3.0 Dicots	AT2G47000

AT2G47000

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation