Zci_13872.1

Description : no annotation

Gene families : OG_01_0006595 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0006595_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zci_13872.1
Cluster	HCCA: Cluster_110

Target	Alias	Description	ECC score	Gene Family Method
AT1G52980	No alias	GTP-binding family protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre07.g340050	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp2g16460.1	No alias	NUG2 LSU processome regulatory GTPase	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0004177	aminopeptidase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004486	methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity	IEP	HCCA
MF	GO:0004488	methylenetetrahydrofolate dehydrogenase (NADP+) activity	IEP	HCCA
MF	GO:0004529	exodeoxyribonuclease activity	IEP	HCCA
MF	GO:0004536	deoxyribonuclease activity	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
BP	GO:0006354	DNA-templated transcription, elongation	IEP	HCCA
BP	GO:0006367	transcription initiation from RNA polymerase II promoter	IEP	HCCA
BP	GO:0006368	transcription elongation from RNA polymerase II promoter	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0007034	vacuolar transport	IEP	HCCA
CC	GO:0008023	transcription elongation factor complex	IEP	HCCA
MF	GO:0008134	transcription factor binding	IEP	HCCA
MF	GO:0008297	single-stranded DNA exodeoxyribonuclease activity	IEP	HCCA
MF	GO:0008409	5'-3' exonuclease activity	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
CC	GO:0016593	Cdc73/Paf1 complex	IEP	HCCA
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	HCCA
MF	GO:0016646	oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0016895	exodeoxyribonuclease activity, producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0017025	TBP-class protein binding	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0030488	tRNA methylation	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
CC	GO:0031515	tRNA (m1A) methyltransferase complex	IEP	HCCA
BP	GO:0032784	regulation of DNA-templated transcription, elongation	IEP	HCCA
BP	GO:0032786	positive regulation of DNA-templated transcription, elongation	IEP	HCCA
BP	GO:0032968	positive regulation of transcription elongation from RNA polymerase II promoter	IEP	HCCA
BP	GO:0034243	regulation of transcription elongation from RNA polymerase II promoter	IEP	HCCA
CC	GO:0034708	methyltransferase complex	IEP	HCCA
MF	GO:0035312	5'-3' exodeoxyribonuclease activity	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
CC	GO:0043527	tRNA methyltransferase complex	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
MF	GO:0045145	single-stranded DNA 5'-3' exodeoxyribonuclease activity	IEP	HCCA
BP	GO:0045893	positive regulation of transcription, DNA-templated	IEP	HCCA
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140296	general transcription initiation factor binding	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012971	NOG2_N_dom	46	170
IPR006073	GTP-bd	371	427

External Links

No external refs found!

Zci_13872.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation