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  5. Zci_13878.1

Zci_13878.1


Description : component uS7 of SSU proteome


Gene families : OG_01_0001562 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001562_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zci_13878.1
Cluster HCCA: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
AT2G37270 No alias ribosomal protein 5B 0.17 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G11940 No alias ribosomal protein 5A 0.22 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g290950 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.25 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g10570.1 No alias component RPS5 of SSU proteome 0.19 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c20_18970V3.1 No alias ribosomal protein 5B 0.18 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c23_6150V3.1 No alias ribosomal protein 5B 0.16 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c24_18880V3.1 No alias ribosomal protein 5B 0.17 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c8_16820V3.1 No alias ribosomal protein 5B 0.2 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c8_16860V3.1 No alias ribosomal protein 5B 0.11 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 cellular amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044267 cellular protein metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071985 multivesicular body sorting pathway IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR023798 Ribosomal_S7_dom 55 113
IPR023798 Ribosomal_S7_dom 149 204
No external refs found!