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  5. Zci_15150.1

Zci_15150.1


Description : ATPase component PIE1 of SWR1 chromatin remodeling complex


Gene families : OG_01_0005341 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0005341_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zci_15150.1
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
Pp3c10_13800V3.1 No alias SNF2 domain-containing protein / helicase... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_30220V3.1 No alias SNF2 domain-containing protein / helicase... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006354 DNA-templated transcription, elongation IEP HCCA
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0030173 integral component of Golgi membrane IEP HCCA
BP GO:0030488 tRNA methylation IEP HCCA
CC GO:0031228 intrinsic component of Golgi membrane IEP HCCA
CC GO:0031300 intrinsic component of organelle membrane IEP HCCA
CC GO:0031301 integral component of organelle membrane IEP HCCA
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0034708 methyltransferase complex IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
CC GO:0043527 tRNA methyltransferase complex IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 1997 2109
IPR000330 SNF2_N 1455 1729
IPR014012 HSA_dom 645 713
No external refs found!