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  5. Zci_16135.1

Zci_16135.1


Description : no annotation


Gene families : OG_01_0000013 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000013_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zci_16135.1

Target Alias Description ECC score Gene Family Method Actions
Pp3c16_18680V3.1 No alias No annotation 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c20_18410V3.1 No alias No annotation 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_10660V3.1 No alias No annotation 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_10590.1 No alias no hits & (original description: none) 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 344 445
IPR025724 GAG-pre-integrase_dom 257 327
IPR001878 Znf_CCHC 60 76
IPR013103 RVT_2 816 1060
No external refs found!