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  5. AT3G03400

AT3G03400


Description : EF hand calcium-binding protein family


Gene families : OG_01_0007868 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0007868_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G03400

Target Alias Description ECC score Gene Family Method Actions
AT2G36180 No alias EF hand calcium-binding protein family 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G03410 No alias EF hand calcium-binding protein family 0.1 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G17470 No alias EF hand calcium-binding protein family 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding ISS Interproscan
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003886 DNA (cytosine-5-)-methyltransferase activity IEP HCCA
MF GO:0004150 dihydroneopterin aldolase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005634 nucleus IEP HCCA
MF GO:0009008 DNA-methyltransferase activity IEP HCCA
MF GO:0009824 AMP dimethylallyltransferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0052622 ATP dimethylallyltransferase activity IEP HCCA
MF GO:0052623 ADP dimethylallyltransferase activity IEP HCCA
BP GO:0060688 regulation of morphogenesis of a branching structure IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1905428 regulation of plant organ formation IEP HCCA
BP GO:2000032 regulation of secondary shoot formation IEP HCCA
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 79 134
IPR002048 EF_hand_dom 42 59
IPR002048 EF_hand_dom 6 32
PLAZA 3.0 Dicots AT3G03400