AT1G11900

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_01_0017728 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G11900
Cluster	HCCA: Cluster_232

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0017022	myosin binding	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030118	clathrin coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030125	clathrin vesicle coat	IEP	HCCA
MF	GO:0030742	GTP-dependent protein binding	IEP	HCCA
MF	GO:0032029	myosin tail binding	IEP	HCCA
MF	GO:0032036	myosin heavy chain binding	IEP	HCCA
CC	GO:0032588	trans-Golgi network membrane	IEP	HCCA
MF	GO:0080115	myosin XI tail binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	178	221
IPR002885	Pentatricopeptide_repeat	247	293
IPR002885	Pentatricopeptide_repeat	320	340
IPR002885	Pentatricopeptide_repeat	73	101

External Links

PLAZA 3.0 Dicots	AT1G11900