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  5. AT3G04440

AT3G04440


Description : Plasma-membrane choline transporter family protein


Gene families : OG_01_0009882 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G04440
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AT5G17830 No alias Plasma-membrane choline transporter family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005886 plasma membrane ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000785 chromatin IEP HCCA
CC GO:0000791 euchromatin IEP HCCA
CC GO:0000795 synaptonemal complex IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005244 voltage-gated ion channel activity IEP HCCA
MF GO:0005253 anion channel activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
MF GO:0008308 voltage-gated anion channel activity IEP HCCA
BP GO:0010417 glucuronoxylan biosynthetic process IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0022832 voltage-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
MF GO:0042285 xylosyltransferase activity IEP HCCA
CC GO:0099086 synaptonemal structure IEP HCCA
InterPro domains Description Start Stop
IPR007603 Choline_transptr-like 197 441
PLAZA 3.0 Dicots AT3G04440