AT3G05500

Description : Rubber elongation factor protein (REF)

Gene families : OG_01_0003489 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0003489_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G05500
Cluster	HCCA: Cluster_215

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005773	vacuole	IDA	Interproscan
CC	GO:0005811	lipid droplet	IDA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006865	amino acid transport	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010200	response to chitin	RCA	Interproscan
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0015849	organic acid transport	None	Extended
BP	GO:0019915	lipid storage	IDA	Interproscan
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051235	maintenance of location	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000164	protein phosphatase type 1 complex	IEP	HCCA
BP	GO:0001763	morphogenesis of a branching structure	IEP	HCCA
MF	GO:0004708	MAP kinase kinase activity	IEP	HCCA
MF	GO:0005310	dicarboxylic acid transmembrane transporter activity	IEP	HCCA
MF	GO:0005344	oxygen carrier activity	IEP	HCCA
CC	GO:0005794	Golgi apparatus	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006352	DNA-templated transcription, initiation	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006446	regulation of translational initiation	IEP	HCCA
BP	GO:0006497	protein lipidation	IEP	HCCA
BP	GO:0006498	N-terminal protein lipidation	IEP	HCCA
BP	GO:0006499	N-terminal protein myristoylation	IEP	HCCA
BP	GO:0006835	dicarboxylic acid transport	IEP	HCCA
BP	GO:0007029	endoplasmic reticulum organization	IEP	HCCA
BP	GO:0007140	male meiotic nuclear division	IEP	HCCA
BP	GO:0007143	female meiotic nuclear division	IEP	HCCA
MF	GO:0008134	transcription factor binding	IEP	HCCA
CC	GO:0008287	protein serine/threonine phosphatase complex	IEP	HCCA
MF	GO:0008565	obsolete protein transporter activity	IEP	HCCA
BP	GO:0009061	anaerobic respiration	IEP	HCCA
BP	GO:0009408	response to heat	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009555	pollen development	IEP	HCCA
BP	GO:0009631	cold acclimation	IEP	HCCA
BP	GO:0009643	photosynthetic acclimation	IEP	HCCA
BP	GO:0009956	radial pattern formation	IEP	HCCA
BP	GO:0010080	regulation of floral meristem growth	IEP	HCCA
BP	GO:0010165	response to X-ray	IEP	HCCA
BP	GO:0010223	secondary shoot formation	IEP	HCCA
BP	GO:0010286	heat acclimation	IEP	HCCA
BP	GO:0010346	shoot axis formation	IEP	HCCA
BP	GO:0010492	maintenance of shoot apical meristem identity	IEP	HCCA
BP	GO:0010608	posttranscriptional regulation of gene expression	IEP	HCCA
BP	GO:0010628	positive regulation of gene expression	IEP	HCCA
MF	GO:0015141	succinate transmembrane transporter activity	IEP	HCCA
MF	GO:0015556	C4-dicarboxylate transmembrane transporter activity	IEP	HCCA
BP	GO:0015669	gas transport	IEP	HCCA
BP	GO:0015671	oxygen transport	IEP	HCCA
BP	GO:0015740	C4-dicarboxylate transport	IEP	HCCA
BP	GO:0015744	succinate transport	IEP	HCCA
BP	GO:0015802	basic amino acid transport	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016854	racemase and epimerase activity	IEP	HCCA
MF	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	IEP	HCCA
MF	GO:0017025	TBP-class protein binding	IEP	HCCA
BP	GO:0018377	protein myristoylation	IEP	HCCA
CC	GO:0019005	SCF ubiquitin ligase complex	IEP	HCCA
BP	GO:0019321	pentose metabolic process	IEP	HCCA
BP	GO:0019322	pentose biosynthetic process	IEP	HCCA
BP	GO:0019566	arabinose metabolic process	IEP	HCCA
BP	GO:0019567	arabinose biosynthetic process	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0030176	integral component of endoplasmic reticulum membrane	IEP	HCCA
CC	GO:0031227	intrinsic component of endoplasmic reticulum membrane	IEP	HCCA
BP	GO:0031365	N-terminal protein amino acid modification	IEP	HCCA
BP	GO:0032270	positive regulation of cellular protein metabolic process	IEP	HCCA
BP	GO:0034248	regulation of cellular amide metabolic process	IEP	HCCA
BP	GO:0034250	positive regulation of cellular amide metabolic process	IEP	HCCA
BP	GO:0035265	organ growth	IEP	HCCA
BP	GO:0043543	protein acylation	IEP	HCCA
BP	GO:0045727	positive regulation of translation	IEP	HCCA
BP	GO:0048229	gametophyte development	IEP	HCCA
MF	GO:0050373	UDP-arabinose 4-epimerase activity	IEP	HCCA
BP	GO:0051247	positive regulation of protein metabolic process	IEP	HCCA
BP	GO:0060771	phyllotactic patterning	IEP	HCCA
BP	GO:0060772	leaf phyllotactic patterning	IEP	HCCA
BP	GO:0060774	auxin mediated signaling pathway involved in phyllotactic patterning	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
CC	GO:0071458	integral component of cytoplasmic side of endoplasmic reticulum membrane	IEP	HCCA
CC	GO:0071782	endoplasmic reticulum tubular network	IEP	HCCA
BP	GO:0071786	endoplasmic reticulum tubular network organization	IEP	HCCA
CC	GO:0098827	endoplasmic reticulum subcompartment	IEP	HCCA
BP	GO:0140013	meiotic nuclear division	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140296	general transcription initiation factor binding	IEP	HCCA
CC	GO:1903293	phosphatase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR008802	REF	17	231

External Links

PLAZA 3.0 Dicots	AT3G05500

AT3G05500

Expression Profile

Co-expression Networks

Functional Annotation