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  5. AT3G06290

AT3G06290


Description : SAC3/GANP/Nin1/mts3/eIF-3 p25 family


Gene families : OG_01_0001418 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001418_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G06290
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
Cre02.g143600 No alias RNA processing.messenger ribonucleoprotein particle... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g09900.1 No alias scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_29590V3.1 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_01491.1 No alias no hits & (original description: none) 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0034399 nuclear periphery IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0000285 1-phosphatidylinositol-3-phosphate 5-kinase activity IEP HCCA
CC GO:0000775 chromosome, centromeric region IEP HCCA
BP GO:0000902 cell morphogenesis IEP HCCA
BP GO:0000904 cell morphogenesis involved in differentiation IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0000976 transcription cis-regulatory region binding IEP HCCA
MF GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding IEP HCCA
MF GO:0000979 RNA polymerase II core promoter sequence-specific DNA binding IEP HCCA
MF GO:0001046 core promoter sequence-specific DNA binding IEP HCCA
MF GO:0001067 transcription regulatory region nucleic acid binding IEP HCCA
BP GO:0001708 cell fate specification IEP HCCA
BP GO:0003002 regionalization IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004430 1-phosphatidylinositol 4-kinase activity IEP HCCA
MF GO:0004694 eukaryotic translation initiation factor 2alpha kinase activity IEP HCCA
MF GO:0005247 voltage-gated chloride channel activity IEP HCCA
MF GO:0005253 anion channel activity IEP HCCA
MF GO:0005254 chloride channel activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006355 regulation of transcription, DNA-templated IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006419 alanyl-tRNA aminoacylation IEP HCCA
BP GO:0006464 cellular protein modification process IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006521 regulation of cellular amino acid metabolic process IEP HCCA
BP GO:0006625 protein targeting to peroxisome IEP HCCA
BP GO:0006635 fatty acid beta-oxidation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
BP GO:0007031 peroxisome organization IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007155 cell adhesion IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0007389 pattern specification process IEP HCCA
BP GO:0007602 phototransduction IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008158 hedgehog receptor activity IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
MF GO:0008240 tripeptidyl-peptidase activity IEP HCCA
BP GO:0008284 positive regulation of cell population proliferation IEP HCCA
MF GO:0008308 voltage-gated anion channel activity IEP HCCA
MF GO:0008793 aromatic-amino-acid:2-oxoglutarate aminotransferase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009062 fatty acid catabolic process IEP HCCA
BP GO:0009303 rRNA transcription IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009583 detection of light stimulus IEP HCCA
BP GO:0009585 red, far-red light phototransduction IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009636 response to toxic substance IEP HCCA
BP GO:0009648 photoperiodism IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009880 embryonic pattern specification IEP HCCA
BP GO:0009887 animal organ morphogenesis IEP HCCA
BP GO:0009888 tissue development IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009895 negative regulation of catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010014 meristem initiation IEP HCCA
BP GO:0010019 chloroplast-nucleus signaling pathway IEP HCCA
BP GO:0010072 primary shoot apical meristem specification IEP HCCA
BP GO:0010090 trichome morphogenesis IEP HCCA
BP GO:0010205 photoinhibition IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0010431 seed maturation IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010506 regulation of autophagy IEP HCCA
BP GO:0010507 negative regulation of autophagy IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010638 positive regulation of organelle organization IEP HCCA
CC GO:0012506 vesicle membrane IEP HCCA
BP GO:0015919 peroxisomal membrane transport IEP HCCA
BP GO:0016042 lipid catabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016303 1-phosphatidylinositol-3-kinase activity IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
BP GO:0016558 protein import into peroxisome matrix IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity IEP HCCA
BP GO:0016926 protein desumoylation IEP HCCA
BP GO:0017038 protein import IEP HCCA
MF GO:0018024 histone-lysine N-methyltransferase activity IEP HCCA
BP GO:0018105 peptidyl-serine phosphorylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018209 peptidyl-serine modification IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019395 fatty acid oxidation IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0021700 developmental maturation IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0022610 biological adhesion IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
BP GO:0030307 positive regulation of cell growth IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0030659 cytoplasmic vesicle membrane IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0031330 negative regulation of cellular catabolic process IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0033238 regulation of cellular amine metabolic process IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034440 lipid oxidation IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0035004 phosphatidylinositol 3-kinase activity IEP HCCA
CC GO:0035619 root hair tip IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0040019 positive regulation of embryonic development IEP HCCA
BP GO:0040034 regulation of development, heterochronic IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0042127 regulation of cell population proliferation IEP HCCA
BP GO:0042138 meiotic DNA double-strand break formation IEP HCCA
BP GO:0042548 regulation of photosynthesis, light reaction IEP HCCA
BP GO:0042752 regulation of circadian rhythm IEP HCCA
BP GO:0042753 positive regulation of circadian rhythm IEP HCCA
MF GO:0042800 histone methyltransferase activity (H3-K4 specific) IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
BP GO:0043155 negative regulation of photosynthesis, light reaction IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
BP GO:0043574 peroxisomal transport IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044242 cellular lipid catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044267 cellular protein metabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0044743 protein transmembrane import into intracellular organelle IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0045595 regulation of cell differentiation IEP HCCA
BP GO:0045596 negative regulation of cell differentiation IEP HCCA
BP GO:0045893 positive regulation of transcription, DNA-templated IEP HCCA
BP GO:0045927 positive regulation of growth IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0045995 regulation of embryonic development IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048015 phosphatidylinositol-mediated signaling IEP HCCA
BP GO:0048017 inositol lipid-mediated signaling IEP HCCA
BP GO:0048467 gynoecium development IEP HCCA
BP GO:0048497 maintenance of floral organ identity IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048573 photoperiodism, flowering IEP HCCA
BP GO:0048574 long-day photoperiodism, flowering IEP HCCA
BP GO:0048609 multicellular organismal reproductive process IEP HCCA
BP GO:0048768 root hair cell tip growth IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0050665 hydrogen peroxide biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051094 positive regulation of developmental process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051240 positive regulation of multicellular organismal process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
CC GO:0051286 cell tip IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051568 histone H3-K4 methylation IEP HCCA
MF GO:0052742 phosphatidylinositol kinase activity IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
CC GO:0060187 cell pole IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0061982 meiosis I cell cycle process IEP HCCA
BP GO:0065002 intracellular protein transmembrane transport IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071695 anatomical structure maturation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071806 protein transmembrane transport IEP HCCA
BP GO:0072329 monocarboxylic acid catabolic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072662 protein localization to peroxisome IEP HCCA
BP GO:0072663 establishment of protein localization to peroxisome IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0080119 ER body organization IEP HCCA
BP GO:0090213 regulation of radial pattern formation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090421 embryonic meristem initiation IEP HCCA
BP GO:0090436 leaf pavement cell development IEP HCCA
BP GO:0090700 maintenance of plant organ identity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
BP GO:0098781 ncRNA transcription IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
BP GO:1903409 reactive oxygen species biosynthetic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1905156 negative regulation of photosynthesis IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
MF GO:1990837 sequence-specific double-stranded DNA binding IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
BP GO:2000232 regulation of rRNA processing IEP HCCA
BP GO:2000234 positive regulation of rRNA processing IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR031907 MCM3AP_GANP 1119 1459
IPR005062 SAC3/GANP/THP3_conserved 483 781
PLAZA 3.0 Dicots AT3G06290