AT1G12220

Description : Disease resistance protein (CC-NBS-LRR class) family

Gene families : OG_01_0000251 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000251_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G12220
Cluster	HCCA: Cluster_144

Target	Alias	Description	ECC score	Gene Family Method
AT1G12210	No alias	RPS5-like 1	0.08	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G12280	No alias	LRR and NB-ARC domains-containing disease resistance protein	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G12290	No alias	Disease resistance protein (CC-NBS-LRR class) family	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G51480	No alias	Disease resistance protein (CC-NBS-LRR class) family	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G52660	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G61180	No alias	LRR and NB-ARC domains-containing disease resistance protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G61310	No alias	LRR and NB-ARC domains-containing disease resistance protein	0.08	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G26090	No alias	NB-ARC domain-containing disease resistance protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G05400	No alias	LRR and NB-ARC domains-containing disease resistance protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G43730	No alias	Disease resistance protein (CC-NBS-LRR class) family	0.09	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G43740	No alias	Disease resistance protein (CC-NBS-LRR class) family	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G47250	No alias	LRR and NB-ARC domains-containing disease resistance protein	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G47260	No alias	ATP binding;GTP binding;nucleotide...	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IMP	Interproscan
BP	GO:0002376	immune system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	ISS	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006497	protein lipidation	None	Extended
BP	GO:0006498	N-terminal protein lipidation	None	Extended
BP	GO:0006499	N-terminal protein myristoylation	IDA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	IMP	Interproscan
BP	GO:0006952	defense response	TAS	Interproscan
BP	GO:0006955	immune response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008219	cell death	IMP	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009626	plant-type hypersensitive response	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0012501	programmed cell death	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0018377	protein myristoylation	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0031365	N-terminal protein amino acid modification	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034050	programmed cell death induced by symbiont	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0038023	signaling receptor activity	IMP	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043543	protein acylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044403	biological process involved in symbiotic interaction	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045087	innate immune response	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051702	biological process involved in interaction with symbiont	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
MF	GO:0060089	molecular transducer activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004329	formate-tetrahydrofolate ligase activity	IEP	HCCA
MF	GO:0004683	calmodulin-dependent protein kinase activity	IEP	HCCA
MF	GO:0005102	signaling receptor binding	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	HCCA
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	HCCA
BP	GO:0009617	response to bacterium	IEP	HCCA
BP	GO:0009835	fruit ripening	IEP	HCCA
BP	GO:0010118	stomatal movement	IEP	HCCA
BP	GO:0010483	pollen tube reception	IEP	HCCA
CC	GO:0012505	endomembrane system	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0019902	phosphatase binding	IEP	HCCA
MF	GO:0019903	protein phosphatase binding	IEP	HCCA
BP	GO:0032880	regulation of protein localization	IEP	HCCA
MF	GO:0033612	receptor serine/threonine kinase binding	IEP	HCCA
BP	GO:0042126	nitrate metabolic process	IEP	HCCA
BP	GO:0042128	nitrate assimilation	IEP	HCCA
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	HCCA
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	HCCA
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
BP	GO:0051703	biological process involved in intraspecies interaction between organisms	IEP	HCCA
MF	GO:0070696	transmembrane receptor protein serine/threonine kinase binding	IEP	HCCA
BP	GO:0071941	nitrogen cycle metabolic process	IEP	HCCA
BP	GO:2001057	reactive nitrogen species metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001611	Leu-rich_rpt	541	597
IPR002182	NB-ARC	161	402

External Links

PLAZA 3.0 Dicots	AT1G12220

AT1G12220

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation