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Description : pumilio 4
Gene families : OG_01_0003065 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0003065_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT3G10360 | |
| Cluster | HCCA: Cluster_22 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | ISS | Interproscan |
| MF | GO:0003729 | mRNA binding | IDA | Interproscan |
| CC | GO:0005737 | cytoplasm | ISM | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000045 | autophagosome assembly | IEP | HCCA |
| CC | GO:0000407 | phagophore assembly site | IEP | HCCA |
| MF | GO:0004672 | protein kinase activity | IEP | HCCA |
| MF | GO:0004707 | MAP kinase activity | IEP | HCCA |
| MF | GO:0004712 | protein serine/threonine/tyrosine kinase activity | IEP | HCCA |
| MF | GO:0004843 | thiol-dependent deubiquitinase | IEP | HCCA |
| MF | GO:0005543 | phospholipid binding | IEP | HCCA |
| CC | GO:0005634 | nucleus | IEP | HCCA |
| BP | GO:0006914 | autophagy | IEP | HCCA |
| BP | GO:0007009 | plasma membrane organization | IEP | HCCA |
| BP | GO:0007033 | vacuole organization | IEP | HCCA |
| MF | GO:0008234 | cysteine-type peptidase activity | IEP | HCCA |
| MF | GO:0008242 | omega peptidase activity | IEP | HCCA |
| BP | GO:0009846 | pollen germination | IEP | HCCA |
| BP | GO:0015804 | neutral amino acid transport | IEP | HCCA |
| BP | GO:0015824 | proline transport | IEP | HCCA |
| MF | GO:0016301 | kinase activity | IEP | HCCA |
| MF | GO:0016740 | transferase activity | IEP | HCCA |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | HCCA |
| MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | HCCA |
| BP | GO:0019321 | pentose metabolic process | IEP | HCCA |
| MF | GO:0019783 | ubiquitin-like protein-specific protease activity | IEP | HCCA |
| BP | GO:0030244 | cellulose biosynthetic process | IEP | HCCA |
| MF | GO:0035091 | phosphatidylinositol binding | IEP | HCCA |
| BP | GO:0042732 | D-xylose metabolic process | IEP | HCCA |
| BP | GO:0046942 | carboxylic acid transport | IEP | HCCA |
| BP | GO:0051274 | beta-glucan biosynthetic process | IEP | HCCA |
| BP | GO:0061919 | process utilizing autophagic mechanism | IEP | HCCA |
| BP | GO:0070925 | organelle assembly | IEP | HCCA |
| MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | HCCA |
| BP | GO:1905037 | autophagosome organization | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR012940 | NABP | 313 | 663 |
| IPR001313 | Pumilio_RNA-bd_rpt | 773 | 806 |
| IPR001313 | Pumilio_RNA-bd_rpt | 882 | 912 |
| IPR001313 | Pumilio_RNA-bd_rpt | 664 | 698 |
| IPR001313 | Pumilio_RNA-bd_rpt | 738 | 766 |
| IPR001313 | Pumilio_RNA-bd_rpt | 704 | 732 |
| IPR001313 | Pumilio_RNA-bd_rpt | 931 | 949 |
| IPR001313 | Pumilio_RNA-bd_rpt | 848 | 878 |
| IPR001313 | Pumilio_RNA-bd_rpt | 809 | 842 |
| PLAZA 3.0 Dicots | AT3G10360 |