AT3G10910

Description : RING/U-box superfamily protein

Gene families : OG_01_0000404 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000404_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G10910
Cluster	HCCA: Cluster_100

Target	Alias	Description	ECC score	Gene Family Method	Actions
Pp3c22_17730V3.1	No alias	RING/U-box superfamily protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010383	cell wall polysaccharide metabolic process	None	Extended
BP	GO:0010410	hemicellulose metabolic process	None	Extended
BP	GO:0010413	glucuronoxylan metabolic process	RCA	Interproscan
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044038	cell wall macromolecule biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0045491	xylan metabolic process	None	Extended
BP	GO:0045492	xylan biosynthetic process	RCA	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0070589	cellular component macromolecule biosynthetic process	None	Extended
BP	GO:0070592	cell wall polysaccharide biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006811	ion transport	IEP	HCCA
BP	GO:0006820	anion transport	IEP	HCCA
BP	GO:0006868	glutamine transport	IEP	HCCA
BP	GO:0007155	cell adhesion	IEP	HCCA
MF	GO:0008171	O-methyltransferase activity	IEP	HCCA
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	HCCA
MF	GO:0008395	steroid hydroxylase activity	IEP	HCCA
BP	GO:0009808	lignin metabolic process	IEP	HCCA
BP	GO:0009809	lignin biosynthetic process	IEP	HCCA
CC	GO:0010008	endosome membrane	IEP	HCCA
BP	GO:0010167	response to nitrate	IEP	HCCA
BP	GO:0010268	brassinosteroid homeostasis	IEP	HCCA
BP	GO:0010585	glutamine secretion	IEP	HCCA
CC	GO:0012505	endomembrane system	IEP	HCCA
CC	GO:0012506	vesicle membrane	IEP	HCCA
BP	GO:0015698	inorganic anion transport	IEP	HCCA
BP	GO:0015706	nitrate transport	IEP	HCCA
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	HCCA
BP	GO:0022610	biological adhesion	IEP	HCCA
CC	GO:0030659	cytoplasmic vesicle membrane	IEP	HCCA
CC	GO:0031224	intrinsic component of membrane	IEP	HCCA
BP	GO:0032890	regulation of organic acid transport	IEP	HCCA
BP	GO:0032940	secretion by cell	IEP	HCCA
BP	GO:0042814	monopolar cell growth	IEP	HCCA
BP	GO:0046903	secretion	IEP	HCCA
BP	GO:0048441	petal development	IEP	HCCA
MF	GO:0051020	GTPase binding	IEP	HCCA
BP	GO:0051952	regulation of amine transport	IEP	HCCA
BP	GO:0051955	regulation of amino acid transport	IEP	HCCA
BP	GO:0055088	lipid homeostasis	IEP	HCCA
BP	GO:0080143	regulation of amino acid export	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA
BP	GO:1903789	regulation of amino acid transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	113	156

External Links

PLAZA 3.0 Dicots	AT3G10910

AT3G10910

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation