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  5. AT3G12070

AT3G12070


Description : RAB geranylgeranyl transferase beta subunit 2


Gene families : OG_01_0001909 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001909_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G12070
Cluster HCCA: Cluster_109


Type GO Term Name Evidence Source
CC GO:0005829 cytosol IDA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000003 reproduction IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0000741 karyogamy IEP HCCA
MF GO:0004871 obsolete signal transducer activity IEP HCCA
CC GO:0005834 heterotrimeric G-protein complex IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006470 protein dephosphorylation IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006626 protein targeting to mitochondrion IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0006928 movement of cell or subcellular component IEP HCCA
BP GO:0006997 nucleus organization IEP HCCA
BP GO:0007005 mitochondrion organization IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009266 response to temperature stimulus IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009409 response to cold IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009639 response to red or far red light IEP HCCA
BP GO:0009640 photomorphogenesis IEP HCCA
BP GO:0009756 carbohydrate mediated signaling IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009845 seed germination IEP HCCA
BP GO:0009880 embryonic pattern specification IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009933 meristem structural organization IEP HCCA
BP GO:0010072 primary shoot apical meristem specification IEP HCCA
BP GO:0010074 maintenance of meristem identity IEP HCCA
BP GO:0010162 seed dormancy process IEP HCCA
BP GO:0010182 sugar mediated signaling pathway IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0010431 seed maturation IEP HCCA
BP GO:0010638 positive regulation of organelle organization IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019827 stem cell population maintenance IEP HCCA
BP GO:0019915 lipid storage IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
BP GO:0022611 dormancy process IEP HCCA
BP GO:0030029 actin filament-based process IEP HCCA
BP GO:0030048 actin filament-based movement IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0030433 ubiquitin-dependent ERAD pathway IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0036503 ERAD pathway IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043687 post-translational protein modification IEP HCCA
BP GO:0045595 regulation of cell differentiation IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0048366 leaf development IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048532 anatomical structure arrangement IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048609 multicellular organismal reproductive process IEP HCCA
BP GO:0048825 cotyledon development IEP HCCA
BP GO:0048827 phyllome development IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0050826 response to freezing IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051645 Golgi localization IEP HCCA
BP GO:0051646 mitochondrion localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0060151 peroxisome localization IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
BP GO:0090421 embryonic meristem initiation IEP HCCA
BP GO:0098727 maintenance of cell number IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
BP GO:0099402 plant organ development IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1905360 GTPase complex IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR001330 PFTB_repeat 200 243
IPR001330 PFTB_repeat 104 145
IPR001330 PFTB_repeat 151 194
IPR001330 PFTB_repeat 249 291
IPR001330 PFTB_repeat 58 96
PLAZA 3.0 Dicots AT3G12070