AT3G12280

Description : retinoblastoma-related 1

Gene families : OG_01_0002528 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002528_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G12280
Cluster	HCCA: Cluster_79

Target	Alias	Description	ECC score	Gene Family Method	Actions
Mp8g18830.1	No alias	cell cycle interphase key regulator	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_2440V3.1	No alias	retinoblastoma-related 1	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0000082	G1/S transition of mitotic cell cycle	IMP	Interproscan
BP	GO:0000082	G1/S transition of mitotic cell cycle	TAS	Interproscan
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0001558	regulation of cell growth	IMP	Interproscan
BP	GO:0001708	cell fate specification	IMP	Interproscan
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IDA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006260	DNA replication	None	Extended
BP	GO:0006261	DNA-dependent DNA replication	RCA	Interproscan
BP	GO:0006275	regulation of DNA replication	None	Extended
BP	GO:0006349	regulation of gene expression by genetic imprinting	IPI	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
MF	GO:0008134	transcription factor binding	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008356	asymmetric cell division	IGI	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009553	embryo sac development	IMP	Interproscan
BP	GO:0009555	pollen development	IMP	Interproscan
BP	GO:0009566	fertilization	None	Extended
BP	GO:0009567	double fertilization forming a zygote and endosperm	IEP	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009888	tissue development	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009960	endosperm development	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010090	trichome morphogenesis	IMP	Interproscan
BP	GO:0010090	trichome morphogenesis	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010564	regulation of cell cycle process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022619	generative cell differentiation	IMP	Interproscan
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032875	regulation of DNA endoreduplication	IMP	Interproscan
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0040008	regulation of growth	None	Extended
BP	GO:0040029	regulation of gene expression, epigenetic	None	Extended
BP	GO:0042023	DNA endoreduplication	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044770	cell cycle phase transition	None	Extended
BP	GO:0044772	mitotic cell cycle phase transition	None	Extended
BP	GO:0044786	cell cycle DNA replication	None	Extended
BP	GO:0044843	cell cycle G1/S phase transition	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048366	leaf development	IMP	Interproscan
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051301	cell division	None	Extended
BP	GO:0051302	regulation of cell division	RCA	Interproscan
BP	GO:0051726	regulation of cell cycle	IMP	Interproscan
BP	GO:0051783	regulation of nuclear division	IMP	Interproscan
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071514	genetic imprinting	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090329	regulation of DNA-dependent DNA replication	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903047	mitotic cell cycle process	None	Extended
BP	GO:2000036	regulation of stem cell population maintenance	IMP	Interproscan
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000278	mitotic cell cycle	IEP	HCCA
BP	GO:0000723	telomere maintenance	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003905	alkylbase DNA N-glycosylase activity	IEP	HCCA
MF	GO:0004564	beta-fructofuranosidase activity	IEP	HCCA
MF	GO:0004843	thiol-dependent deubiquitinase	IEP	HCCA
MF	GO:0005200	structural constituent of cytoskeleton	IEP	HCCA
CC	GO:0005635	nuclear envelope	IEP	HCCA
CC	GO:0005654	nucleoplasm	IEP	HCCA
CC	GO:0005819	spindle	IEP	HCCA
BP	GO:0005985	sucrose metabolic process	IEP	HCCA
BP	GO:0005987	sucrose catabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006284	base-excision repair	IEP	HCCA
BP	GO:0006304	DNA modification	IEP	HCCA
BP	GO:0006305	DNA alkylation	IEP	HCCA
BP	GO:0006306	DNA methylation	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006722	triterpenoid metabolic process	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007049	cell cycle	IEP	HCCA
BP	GO:0007051	spindle organization	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0008242	omega peptidase activity	IEP	HCCA
BP	GO:0008360	regulation of cell shape	IEP	HCCA
MF	GO:0008725	DNA-3-methyladenine glycosylase activity	IEP	HCCA
BP	GO:0009313	oligosaccharide catabolic process	IEP	HCCA
CC	GO:0009524	phragmoplast	IEP	HCCA
BP	GO:0009560	embryo sac egg cell differentiation	IEP	HCCA
BP	GO:0009911	positive regulation of flower development	IEP	HCCA
BP	GO:0010091	trichome branching	IEP	HCCA
BP	GO:0010482	regulation of epidermal cell division	IEP	HCCA
BP	GO:0010769	regulation of cell morphogenesis involved in differentiation	IEP	HCCA
CC	GO:0012505	endomembrane system	IEP	HCCA
BP	GO:0016104	triterpenoid biosynthetic process	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	HCCA
MF	GO:0016929	SUMO-specific protease activity	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
MF	GO:0019104	DNA N-glycosylase activity	IEP	HCCA
BP	GO:0019742	pentacyclic triterpenoid metabolic process	IEP	HCCA
BP	GO:0019745	pentacyclic triterpenoid biosynthetic process	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein-specific protease activity	IEP	HCCA
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	IEP	HCCA
BP	GO:0030856	regulation of epithelial cell differentiation	IEP	HCCA
BP	GO:0031128	developmental induction	IEP	HCCA
BP	GO:0031129	inductive cell-cell signaling	IEP	HCCA
BP	GO:0031425	chloroplast RNA processing	IEP	HCCA
BP	GO:0032200	telomere organization	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0042814	monopolar cell growth	IEP	HCCA
BP	GO:0043247	telomere maintenance in response to DNA damage	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
MF	GO:0043733	DNA-3-methylbase glycosylase activity	IEP	HCCA
BP	GO:0044275	cellular carbohydrate catabolic process	IEP	HCCA
BP	GO:0044728	DNA methylation or demethylation	IEP	HCCA
BP	GO:0045604	regulation of epidermal cell differentiation	IEP	HCCA
BP	GO:0045682	regulation of epidermis development	IEP	HCCA
BP	GO:0046352	disaccharide catabolic process	IEP	HCCA
BP	GO:0048530	fruit morphogenesis	IEP	HCCA
BP	GO:0051225	spindle assembly	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0090435	protein localization to nuclear envelope	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	HCCA
BP	GO:2000024	regulation of leaf development	IEP	HCCA
BP	GO:2000039	regulation of trichome morphogenesis	IEP	HCCA
BP	GO:2000243	positive regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR015030	RB_C	885	969
IPR024599	RB_N	94	229
IPR002719	RB_B	730	857
IPR002720	RB_A	406	607

External Links

PLAZA 3.0 Dicots	AT3G12280

AT3G12280

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation