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  5. AT3G13228

AT3G13228


Description : RING/U-box superfamily protein


Gene families : OG_01_0002010 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002010_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G13228
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
AT1G18760 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G18780 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G21960 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G29840 No alias RING/U-box superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0004044 amidophosphoribosyltransferase activity IEP HCCA
MF GO:0004467 long-chain fatty acid-CoA ligase activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005788 endoplasmic reticulum lumen IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006863 purine nucleobase transport IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
BP GO:0009113 purine nucleobase biosynthetic process IEP HCCA
BP GO:0009555 pollen development IEP HCCA
BP GO:0009556 microsporogenesis IEP HCCA
BP GO:0009698 phenylpropanoid metabolic process IEP HCCA
BP GO:0009699 phenylpropanoid biosynthetic process IEP HCCA
BP GO:0009943 adaxial/abaxial axis specification IEP HCCA
BP GO:0010152 pollen maturation IEP HCCA
BP GO:0010208 pollen wall assembly IEP HCCA
BP GO:0010584 pollen exine formation IEP HCCA
BP GO:0010927 cellular component assembly involved in morphogenesis IEP HCCA
MF GO:0015271 outward rectifier potassium channel activity IEP HCCA
MF GO:0015645 fatty acid ligase activity IEP HCCA
BP GO:0015851 nucleobase transport IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016207 4-coumarate-CoA ligase activity IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016621 cinnamoyl-CoA reductase activity IEP HCCA
MF GO:0016713 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0018685 alkane 1-monooxygenase activity IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019825 oxygen binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0030638 polyketide metabolic process IEP HCCA
BP GO:0030639 polyketide biosynthetic process IEP HCCA
MF GO:0031956 medium-chain fatty acid-CoA ligase activity IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0034293 sexual sporulation IEP HCCA
BP GO:0035337 fatty-acyl-CoA metabolic process IEP HCCA
BP GO:0035384 thioester biosynthetic process IEP HCCA
BP GO:0035445 borate transmembrane transport IEP HCCA
BP GO:0043624 cellular protein complex disassembly IEP HCCA
BP GO:0043934 sporulation IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0046112 nucleobase biosynthetic process IEP HCCA
BP GO:0046713 borate transport IEP HCCA
MF GO:0046715 active borate transmembrane transporter activity IEP HCCA
BP GO:0046949 fatty-acyl-CoA biosynthetic process IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0048236 plant-type sporogenesis IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0051321 meiotic cell cycle IEP HCCA
BP GO:0051791 medium-chain fatty acid metabolic process IEP HCCA
BP GO:0051792 medium-chain fatty acid biosynthetic process IEP HCCA
BP GO:0071616 acyl-CoA biosynthetic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
MF GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity IEP HCCA
BP GO:0080110 sporopollenin biosynthetic process IEP HCCA
MF GO:0090439 tetraketide alpha-pyrone synthase activity IEP HCCA
BP GO:0098661 inorganic anion transmembrane transport IEP HCCA
BP GO:1900150 regulation of defense response to fungus IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 274 316
PLAZA 3.0 Dicots AT3G13228