AT3G13770

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG_01_0000019 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000019_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G13770
Cluster	HCCA: Cluster_309

Target	Alias	Description	ECC score	Gene Family Method
AT2G22410	No alias	SLOW GROWTH 1	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G13880	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.09	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G22150	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G29230	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G57430	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G18840	No alias	Pentatricopeptide repeat (PPR-like) superfamily protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G09950	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G16860	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G55740	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0010154	fruit development	IEP	HCCA
BP	GO:0031425	chloroplast RNA processing	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR032867	DYW_dom	494	616
IPR002885	Pentatricopeptide_repeat	218	264
IPR002885	Pentatricopeptide_repeat	116	163
IPR002885	Pentatricopeptide_repeat	320	367
IPR002885	Pentatricopeptide_repeat	395	422
IPR002885	Pentatricopeptide_repeat	293	318

External Links

PLAZA 3.0 Dicots	AT3G13770