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  5. AT3G13880

AT3G13880


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000019 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000019_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G13880
Cluster HCCA: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
AT1G03540 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G03380 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G03880 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G22410 No alias SLOW GROWTH 1 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G13770 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G57430 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G04370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G18840 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G21300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G32430 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G33990 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G09950 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G39680 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G55740 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP HCCA
BP GO:0000076 DNA replication checkpoint signaling IEP HCCA
BP GO:0000280 nuclear division IEP HCCA
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
BP GO:0000959 mitochondrial RNA metabolic process IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle IEP HCCA
BP GO:0010948 negative regulation of cell cycle process IEP HCCA
BP GO:0016444 somatic cell DNA recombination IEP HCCA
BP GO:0031570 DNA integrity checkpoint signaling IEP HCCA
BP GO:0045786 negative regulation of cell cycle IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0080156 mitochondrial mRNA modification IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
BP GO:1900864 mitochondrial RNA modification IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901988 negative regulation of cell cycle phase transition IEP HCCA
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902749 regulation of cell cycle G2/M phase transition IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 423 470
IPR002885 Pentatricopeptide_repeat 316 368
IPR002885 Pentatricopeptide_repeat 112 158
IPR002885 Pentatricopeptide_repeat 523 572
IPR002885 Pentatricopeptide_repeat 213 260
IPR002885 Pentatricopeptide_repeat 187 211
PLAZA 3.0 Dicots AT3G13880